BAC Information

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BAC

Clone NameMSMg01-237H24
Chromosome6 (Build37)
Map Location 73,534,353 - 73,534,670
singlet/doubletsinglet
Overlap genenone
Upstream geneRbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237H24.T7 (MSMg01no237_h24.b1)MSMg01-237H24.TJ (MSMg01no237_h24.g1)
ACCAG402429AG402430
length712682
length of high quality
(start - end)
241 (79 - 319)318 (355 - 672)
definitionCHROMAT_FILE: MSMg01no237_h24.b1 PHD_FILE: MSMg01no237_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:21 2005CHROMAT_FILE: MSMg01no237_h24.g1 PHD_FILE: MSMg01no237_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTATGGGAGAGGGGTTCCTG
ACACCCTCTCCTAGCTGAGGCACTGTTGTTTGTTGATGACTTCTGAAGGA
GGAAGAACAAACTTACTTTGTGAGGGTGGTCATTGGTAAACTAGCTATTC
ATGTTACTGTGGATGATCCAACACCCATGGGCATATCCAACACTAATGGG
CAGCACAAATTGGATTCAGTGACTTATAACACAAAAGAGAATATGAAGTT
GGGAGTGTGATGTGTTGGGTGTTTCCCAAGGGAGTTGAGGAAAGGAGTAG
GGGTGGATAGTGTATTTTGATACCTCCGCCCACGTGTGTGTGTGTGTGTG
TTTGTGTATACACATATATATTTCAAATAATAATTAAAGTGGTCTCTAGA
GGTGGATGTATCACACATGCTTAAAATTTGTCCACTTCAGTAGCCAGAGC
TGAGATATTTAAACTATACAATTATAAGGAAAATAGATAAACTTAGTCCC
ATCCCTCTCCTCCACTGGGGCAGTCATGGTCTAAACTAGAAAACCCAGGG
GTTCCTTTAGGGTAGAATGCTTATTGACAGTCATCCTCAAACACTTGGAT
GGCACCAGTGGTAATATCTTGTGGGAAAAACCTAAGTGAGTTGACATAGG
GTTATTGCTGAA
ACTCCTATAGTCAGAGGATCCGCGGAATTCTCTGAGCTTCCCTAATGTTT
GACTGTGGGTCTCTGCATGTGATCCCACCAGCTGCTGGATAAAGCCCCTT
GATGACAATTAGGTGAGGTTCCAGTCTGTGGTGACTCAGGTACTTAAGTG
GAGGTGAGCTCTATGAGAAAATGTCAAGGGAGAATCCCTGGGTGTTCTAC
AGGGGGTGTGGAAGAGAAGGAGCTTCATCCTTGTGACAGCAAAACCTTTT
CCAGAAAAACAGAGAAGCACCCAGCTATATGCATATATGCACCCATTTAT
CTGCATATGGTAGCTCTCATATGGTCCCCAACGTATTCCTTAGAACACCT
GGCAGAGATGACCTACCTATGGTCTATCAGTGTCTACCAGAGTCTAATCC
TCTGAACTGTATTCACTGCATCTATTTGCATATGTATAGATAGATAGAGA
TCAGATTATCTAATACACCACTGCATAACCTCAGGCCTAGCCCAGAAAAG
CTCCTGGGTTTCATTTTACCTTAGAAGCCATTTTACTGGAAGATGTCAGT
AGAATTTAACTGGGTCCTTGAAAGAACGTTAGCATCCCACTCTTCTCCTT
TCCCTTCCCTTCCCTTGTCCTCCCTTCTTCCTTTCTTCCTCCTCCTCCCT
TTCTCTCCCCTTATTCTTTGTCCAATTGTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_h24.g1 MSMg01no237_h24.g1 CHROMAT_FILE:
MSMg01no237_h24.g1 PHD_FILE: MSMg01no237_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:21 2005
         (318 letters)



>mm_chr6_73534230_73534947
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagatgacctacctatggtctatcagtgtctaccagagtctaatcctctgaactgtattc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gagatgacctacctatggtctatcagtgtctaccagagtctaatcttctgaactgtattc 382

                                                                       
Query: 61  actgcatctatttgcatatgtatagatagatagagatcagattatctaatacaccactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgcatctatttgcatatgtatagatagatagagatcagattatctaatacaccactgc 322

                                                                       
Query: 121 ataacctcaggcctagcccagaaaagctcctgggtttcattttaccttagaagccatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacctcaggcctagcccagaaaagctcctgggtttcattttaccttagaagccatttt 262

                                                                       
Query: 181 actggaagatgtcagtagaatttaactgggtccttgaaagaacgttagcatcccactctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggaagatgtcagtagaatttaactgggtccttgaaagaacgttagcatcccactctt 202

                                                                       
Query: 241 ctcctttcccttcccttcccttgtcctcccttcttcctttcttcctcctcctccctttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctttcccttcccttcccttgtcctcccttcttcctttcttcctcctcctccctttct 142

                             
Query: 301 ctccccttattctttgtc 318
           ||||||||||||||||||
Sbjct: 141 ctccccttattctttgtc 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)