BAC Information

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BAC

Clone NameMSMg01-237J09
Chromosome6 (Build37)
Map Location 11,757,902 - 11,758,006
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237J09.T7 (MSMg01no237_j09.b1)MSMg01-237J09.TJ (MSMg01no237_j09.g1)
ACCAG402493AG402494
length758633
length of high quality
(start - end)
241 (102 - 342)105 (57 - 161)
definitionCHROMAT_FILE: MSMg01no237_j09.b1 PHD_FILE: MSMg01no237_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:27 2005CHROMAT_FILE: MSMg01no237_j09.g1 PHD_FILE: MSMg01no237_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATATTCAGAGGATCCGCGGAATTCCATGGGATTCCAACAGAGT
TAACTAACCTGGACCCCTAGGAGCTCTCAGAGACTGAATACTTATCAACA
AGCATACTTGGGCTGTAACCAGGCTCCCGGTACATATGTAACAGACATAT
GTAGGTCAGTCTCCATGTGCGTCTCTATGGTATCTGTTCTCTGACAGAGC
TGCCTTGTCTGGTCTCAGTGGGAGAGGAAGTACTTTATTCTGCAGAGACT
TGATGTGCTAGGGTTGGGGAATAATGGGAGTTGCCCACCCTCTTCAGAGG
GAGAATGGGAGCAGAGACTCTGTGAGGGAGTAAAGGAAAGAGGGGCGGGG
GAGTGCCATTTTATATGTAAATAATTTAAACTATTTTTTCCCCCCCCCGT
GTTACAATACAATATTTTTTTTTGCCAACTCCTCCAACCTTTCTTTTTTC
TTTCCCGCTTCACCTTTTTTTCCCTTTCTCTCTTCCCCTTCTCTTCTCAC
TTTTTCACCCACCTTCCTGTCACTATCTTCCATCTAACACTTATATTTTT
ATTACTTTCTCATCTTCCTCATTTTTTCTCCTCCCATTTTTTTCTCCTTT
ATCCTTTTCTTTTCTCATTATTCTTATTTCCCCCCTTCTTATTTTTCTTT
ATCCTCTTTCTTTCTTTTCTCCTTACACAACATATTATCTTTATAAACAC
CCTTTCTTCCCTACCCTTACTTTTCTTCCTTTAATACCCTCCTCCTCTTC
TTCTCATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGACTTAGTTGTGGTTAAGTTTGCAGGAAATTTTTTTATGTCCA
ACAAATGTGATCTTAGTCTAGAAAGACCTGTGACTGCTTGAGACTTAGTT
GACTTTTAAAATCTTCCTTCCTACTGTGAAGTAAGTAGAGAATAAAAGTT
AACTTGGGCCTCCCAAGGATGGAAAAACTCTTCGGCGGGAAAAATGGGCA
ATAGGGGATCCCCCGAGAGACACTTCTTCTTAAAAAAAAAAAGGGTGGTA
AATTTTTTTTTTATATATCAATATACATATTTTTCTTCATCTTTTATCTT
CTAATTTTTTATCCTCCTTCATCTCCCCCTTTCTCCCCTTTTTTTCTATT
TCTTTCTTATAATCAGCCCACTTCCCTCCCCTCTCTTTTCTGCTGTGAAA
CTATTTTTTTCTCTTTCTTTACCTAACCTTCCTTCCCCTCTTTTTAACAT
ATGTATTGATTTCTTCTTTTACCCCTTCCTTCAATCTATTCTCTTTACCC
CCCCCCCCTTTTTTTTTTATTTTATCTTACTCACTCTTTTTATTTCTCAC
ATACTCTCCCCCCCCTCCCTCTTCTCTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_j09.g1 MSMg01no237_j09.g1 CHROMAT_FILE:
MSMg01no237_j09.g1 PHD_FILE: MSMg01no237_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:27 2005
         (105 letters)



>mm_chr6_11757702_11758206
          Length = 505

 Score =  195 bits (101), Expect = 5e-55
 Identities = 104/105 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacttagttgtggttaagtttgcaggaaatttttttatgtccaacaaatgtgatcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agacttagttgtggttaagtttgcaggaaatttttttatgtccaataaatgtgatcttag 260

                                                        
Query: 61  tctagaaagacctgtgactgcttgagacttagttgacttttaaaa 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagaaagacctgtgactgcttgagacttagttgacttttaaaa 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)