BAC Information

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BAC

Clone NameMSMg01-237K06
Chromosome6 (Build37)
Map Location 143,795,817 - 143,946,191
singlet/doubletdoublet
Overlap geneSox5
Upstream geneSt8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237K06.T7 (MSMg01no237_k06.b1)MSMg01-237K06.TJ (MSMg01no237_k06.g1)
ACCAG402531AG402532
length713735
length of high quality
(start - end)		327 (36 - 362)657 (77 - 733)
definitionCHROMAT_FILE: MSMg01no237_k06.b1 PHD_FILE: MSMg01no237_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:31 2005CHROMAT_FILE: MSMg01no237_k06.g1 PHD_FILE: MSMg01no237_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,945,869 - 143,946,191)(143,795,817 - 143,796,473)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGACA
GCAATCTTTCTCTCGGCCAGTTTAGCCTGTGAAGTATTAAAAGTTCCCAA
AGACGCCTAGTCCTCTGCAAAGGGCACAAAAGTTACTAAGAAGCCTCTAT
GAAATTGCTTCCTTTCTTTTTTATTAGCAAGATTTTTAATGCTGTCTAGA
TTTGTACAGGGCCAGGTGACTGTGTGCATTTCATTCTTCCGGTGTGTCTA
ATGCTGGCTGATTGGCCTGTTTCTACCAGGAGTGCATCTGCATAGAACAG
AATATTTGAAGCCAACTTAATTTAGTCCAGATTTAAAAATATTCTAGCAA
CATATCTTTTACATCCTGCGTACAGATATAAAACCAGATACTATCACAAG
AAACCATCCATACCTAAACCCACCATCCTATTCTGAATTTCCAAGATGAA
GTATATATAACCAATAATTCCTGTTTGCATTACTAATGCTCTCTAAGGAT
GCCTTCTATATTCTTCCAGGACAAGACTAGAACGTAAACATGACATAGAT
CCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCT
TTTTCCTCTCTTTTCTTTATTTTTTTTATCCATATTCCTCCACCATCTCT
GTTTTTCGTTTTTCATTTCGACCCCCCCCCCCTTTTTTTTTATCTTTCTG
CCTTTCTTTTGTC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTACATTAAATTTTACACAC
ATTTCTCAGGAGTCCCGGTAGATCTTCATTTATTCAGAAACAGAAGTAAA
TGAAGATGATATGGTGGATCAACAAAACAGCGAGTCGGATTTAAAATAGT
TTTCACCGCCTAAAGGAGTTCCGTTCCGAGGGGAAGGAATCAGTCAGATG
TCGTAAACACTGGTGATGTGAAATAGTCCTCCCATGGTCTTCCTTTCAAT
TTCCCACGTCCCCATCAGCGAACTTCTAAGCAGTGGTTCTCAACCTGACT
GTCTCCACCCCTTTGGGAGTCAGGTGACTCTTTCATTCTAGTTGCCTTAG
ACCATCAGAAAGCACTGATATTTACATTATGATTCAAAAGAGTAGCAAAA
TTAGACTTATGAAGTAGCAACAAAAATAATTTTTATGGCTGGGGGTGGCC
TTAAAGAGTCACAGCAGTAGAAAGGTTGAGAACCACTGCCCTAAAGGGAC
CGACATGGGTGGTATCATTTCTAAGACTCAGTCATTTGAGATTACACCCT
TTAGTTTTAATATTTCCTTTTACATAATTCTCTATTTGTATGTTCAAATA
CTGCTAGGAATAAGAATAGTTGGCTCTCGGTCCTCAGATTTAAATTTTGT
CTAGATAGAATCAGCTTCAGTAAATAAGACGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_k06.b1 MSMg01no237_k06.b1 CHROMAT_FILE:
MSMg01no237_k06.b1 PHD_FILE: MSMg01no237_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:31 2005
         (327 letters)



>mm_chr6_143945666_143946392
          Length = 727

 Score =  625 bits (323), Expect = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagacagcaatctttctctcggccagtttagcctgtgaagtattaaaagttccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggaattcagacagcaatctttctctcggccagtttagcctgtgaagtattaaaagttccc 467

                                                                       
Query: 64  aaagacgcctagtcctctgcaaagggcacaaaagttactaagaagcctctatgaaattgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaagacgcctagtcctctgcaaagggcacaaaagttactaagaagcctctatgaaattgc 407

                                                                       
Query: 124 ttcctttcttttttattagcaagatttttaatgctgtctagatttgtacagggccaggtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttcctttcttttttattagcaagatttttaatgctgtctagatttgtacagggccaggtg 347

                                                                       
Query: 184 actgtgtgcatttcattcttccggtgtgtctaatgctggctgattggcctgtttctacca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 actgtgtgcatttcattcttccggtgtgtctaatgctggctgattggcctgtttctacca 287

                                                                       
Query: 244 ggagtgcatctgcatagaacagaatatttgaagccaacttaatttagtccagatttaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ggagtgcatctgcatagaacagaatatttgaagccaacttaatttagtccagatttaaaa 227

                                  
Query: 304 atattctagcaacatatctttta 326
           |||||||||||||||||||||||
Sbjct: 226 atattctagcaacatatctttta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no237_k06.g1 MSMg01no237_k06.g1 CHROMAT_FILE:
MSMg01no237_k06.g1 PHD_FILE: MSMg01no237_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:31 2005
         (657 letters)



>mm_chr6_143795617_143796673
          Length = 1057

 Score = 1263 bits (653), Expect = 0.0
 Identities = 656/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtactacattaaattttacacacatttctcaggagtcccggtagatcttcatttattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agtactacattaaattttacacacatttctcaggagtcccggtagatattcatttattca 260

                                                                       
Query: 61  gaaacagaagtaaatgaagatgatatggtggatcaacaaaacagcgagtcggatttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaacagaagtaaatgaagatgatatggtggatcaacaaaacagcgagtcggatttaaaa 320

                                                                       
Query: 121 tagttttcaccgcctaaaggagttccgttccgaggggaaggaatcagtcagatgtcgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttttcaccgcctaaaggagttccgttccgaggggaaggaatcagtcagatgtcgtaa 380

                                                                       
Query: 181 acactggtgatgtgaaatagtcctcccatggtcttcctttcaatttcccacgtccccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactggtgatgtgaaatagtcctcccatggtcttcctttcaatttcccacgtccccatc 440

                                                                       
Query: 241 agcgaacttctaagcagtggttctcaacctgactgtctccacccctttgggagtcaggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcgaacttctaagcagtggttctcaacctgactgtctccacccctttgggagtcaggtg 500

                                                                       
Query: 301 actctttcattctagttgccttagaccatcagaaagcactgatatttacattatgattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actctttcattctagttgccttagaccatcagaaagcactgatatttacattatgattca 560

                                                                       
Query: 361 aaagagtagcaaaattagacttatgaagtagcaacaaaaataatttttatggctgggggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagagtagcaaaattagacttatgaagtagcaacaaaaataatttttatggctgggggt 620

                                                                       
Query: 421 ggccttaaagagtcacagcagtagaaaggttgagaaccactgccctaaagggaccgacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccttaaagagtcacagcagtagaaaggttgagaaccactgccctaaagggaccgacat 680

                                                                       
Query: 481 gggtggtatcatttctaagactcagtcatttgagattacaccctttagttttaatatttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggtggtatcatttctaagactcagtcatttgagattacaccctttagttttaatatttc 740

                                                                       
Query: 541 cttttacataattctctatttgtatgttcaaatactgctaggaataagaatagttggctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttttacataattctctatttgtatgttcaaatactgctaggaataagaatagttggctc 800

                                                                    
Query: 601 tcggtcctcagatttaaattttgtctagatagaatcagcttcagtaaataagacgat 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcggtcctcagatttaaattttgtctagatagaatcagcttcagtaaataagacgat 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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