BAC Information

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BAC

Clone NameMSMg01-237N22
Chromosome6 (Build37)
Map Location 43,203,565 - 43,332,006
singlet/doubletdoublet
Overlap geneArhgef5, Nobox, Tpk1, LOC665747
Upstream geneTmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47
Downstream geneLOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N22.T7 (MSMg01no237_n22.b1)MSMg01-237N22.TJ (MSMg01no237_n22.g1)
ACCAG402693AG402694
length719693
length of high quality
(start - end)		340 (380 - 719)317 (23 - 339)
definitionCHROMAT_FILE: MSMg01no237_n22.b1 PHD_FILE: MSMg01no237_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:48 2005CHROMAT_FILE: MSMg01no237_n22.g1 PHD_FILE: MSMg01no237_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,203,565 - 43,203,905)(43,331,696 - 43,332,006)
sequence
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGCATGCTCTAGGCATGTGTTGA
ACCACTGAGTTGCTGATTAGCCCCGTCCTCAGCCTCTGTGACAACATCAT
TAAGAAGAATGAGAATTTACTAATCAAAATTAGTTCAGGAAATATAAGAG
ACTGAAGAGTATGTGTCTCTTACCCTTGTAAATTATCAGCCATCAATATT
CCAACGAGTTTTAGAGAAAAGAATCGATTTGGGTAGTGAGGTTTCATGAA
CATCTTTGAGTTTATACAATTACATTTATGAGGAGAATACCATAAAACCT
ATAACAGTGTTTTGTATTGGACCACCCCTTCTCTATCACATTAACAAAGA
AATGAAGATTTTTTTTAAAAATACAGTTAGTGAGTTGGGGAGATGGCGCA
TGAGCAACAAGAAAACCTCAATTAGAGTCCCTAAAAGTCCCATAAGGAAG
TGGAGAAGGGCAGCACACACCAGGATTCAGAGATAGATGGGCTCTTCATG
CTTAATGTCTCCATGTTCACTGAGAGCCTGTCTCACAAAATAAATTGGAC
AGTGATATCAGACACCTAGCATCAACTTCTAGCCATATGCATATGAATAT
ATACATACATGCATCTGAACATACATGTGCACACATTCATGAACACAAAC
ACACATACCAGCAGTACAG

XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTAAATACATCAAACC
GAAAGTAATCTGGGTAGTAAATTACTGACATGGATGCTGGAATGACCCCG
ACCTTGGATGTTAAAGAGAAATAGCTTGGTATGGTTGGCACTCTGTAACA
GAGAGAAAGCAAGCAAACTTTTTCCCACATACTGACTCTGTGCCTTTGCA
TAAATAGAACTATTTGTTTTGAAAGAGCCAAACAAATTGCCATTTTAAGA
TGCCTTAGAAATCTGTTGAGGTTGGCAGTGGTACCATTTATCAAGCAACA
TCATGAAAATTTCTCATTTGCTTCCTATACTGTGTTTCTGTAAGCCACCG
CCCTCTGTGTTTTACGATACAAAGGGAGAAATGTTGCTCCAGGTTTTGGT
TATATTTCATGTGTCATTCTAACCGAGTTTTGGTAATGCTTGGAGGATTT
TGAAAAGAATCCTTCCAGAATGTTTTTGCACATCATTAAAACACGTTTAT
CATGTCAAGAAAATAAATGAATTGATGAGTGTTTATATGAAATAAGACCT
TCTCTCAACATATAGACTAATATTTAAAATAATGTATTCAAGTAAAAGTA
TAGGAACTGTATCTCTTGTGTCATTGTAGTTCCTTCTTTGAAGGAATAAT
AGCAGTCTGAGGTAAATAACTCTGTTTTAATTCACATCAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n22.b1 MSMg01no237_n22.b1 CHROMAT_FILE:
MSMg01no237_n22.b1 PHD_FILE: MSMg01no237_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:48 2005
         (340 letters)



>mm_chr6_43203365_43204105
          Length = 741

 Score =  572 bits (296), Expect = e-168
 Identities = 329/346 (95%), Gaps = 11/346 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctatcacattaacaaagaaatgaagattttttttaaaaa------tacagttagtga 54
           ||||||||||||||||||||||||||||||||     |||||      ||||||||||||
Sbjct: 201 tctctatcacattaacaaagaaatgaagattt-----aaaaaaaaaaatacagttagtga 255

                                                                       
Query: 55  gttggggagatggcgcatgagcaacaagaaaacctcaattagagtccctaaaagtcccat 114
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 256 gttggggagatggcgcatgagcaacaggaaaacctcaattagagtccctaaaagtcccat 315

                                                                       
Query: 115 aaggaagtggagaagggcagcacacaccaggattcagagatagatgggctcttcatgctt 174
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 316 aaggaagtggagaagggcagcacacaccaggattcagagataggtgggctcttcatgctt 375

                                                                       
Query: 175 aatgtctccatgttcactgagagcctgtctcacaaaataaattggacagtgatatcagac 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aatgtctccatgttcactgagagcctgtctcacaaaataaattggacagtgatatcagac 435

                                                                       
Query: 235 acctagcatcaacttctagccatatgcatatgaatatatacatacatgcatctgaacata 294
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 436 acctggcatcaacttctagccatatgcatatgaatatatatatacatgcatctgaacata 495

                                                         
Query: 295 catgtgcacacattcatgaacacaaacacacataccagcagtacag 340
           ||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 catgtacacacattcatgaacacacacacacataccagcagtacag 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space:   242292
Effective search space used:   242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no237_n22.g1 MSMg01no237_n22.g1 CHROMAT_FILE:
MSMg01no237_n22.g1 PHD_FILE: MSMg01no237_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:48 2005
         (317 letters)



>mm_chr6_43331492_43332208
          Length = 717

 Score =  555 bits (287), Expect = e-162
 Identities = 305/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttaaatacatcaaaccgaaagtaatctgggtagtaaattactgacatggatg 64
           ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 515 gaattcatttaaatagatcaaaccgaaagcaatctgggtagtaaattacagacatggatg 456

                                                                       
Query: 65  ctggaatgaccccgaccttggatgttaaagagaaatagcttggtatggttggcactctgt 124
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctggagtgaccctgaccttggatgttaaagagaaatagcttggtatggttggcactctgt 396

                                                                       
Query: 125 aacagagagaaagcaagcaaactttttcccacatactgactctgtgcctttgcataaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aacagagagaaagcaagcaaactttttcccacatactgactctgtgcctttgcataaata 336

                                                                       
Query: 185 gaactatttgttttgaaagagccaaacaaattgccattttaagatgccttagaaatctgt 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 335 gaactatttgttttgaaagagccaaacaaattaccattttaagatgccttagaaatctgt 276

                                                                       
Query: 245 tgaggttggcagtggtaccatttatcaagcaacatcatgaaaatttctcatttgcttcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgaggttggcagtggtaccatttatcaagcaacatcatgaaaatttctcatttgcttcct 216

                      
Query: 305 atactgtgttt 315
           |||||||||||
Sbjct: 215 atactgtgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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