BAC Information

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BAC

Clone NameMSMg01-260J04
Chromosome6 (Build37)
Map Location 78,762,685 - 78,763,067
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260J04.T7 (MSMg01no260_j04.b1)MSMg01-260J04.TJ (MSMg01no260_j04.g1)
ACCAG403199AG403200
length774756
length of high quality
(start - end)
426 (41 - 466)383 (74 - 456)
definitionCHROMAT_FILE: MSMg01no260_j04.b1 PHD_FILE: MSMg01no260_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:42 2005CHROMAT_FILE: MSMg01no260_j04.g1 PHD_FILE: MSMg01no260_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGCCCATACCTAAACATGATAAAAGCAATCTAGAGCAAACCAGTAGCC
AACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGG
GACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTG
AAGTATTAGCCAGAGCAATTTGACAACAAAAGGAGATCAAGGGGATACAA
ATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGN
ATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAA
ACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATG
GCCTTTCTCTATACAAAGAATAAACAGGCTGAGAATTAGGGAAACAACAC
CCTTCTCAATAGNCACAAATAGTATAAAATATCTTGGCGTGACTCTAACT
AAGGAGGTGAAAGATCTGTATGATAAAANCTTCAAATCTCTGAAGAAAGA
AATTAAAGAAGAACTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTG
GCAGGATCAACTTTGTAAAAATGGCTATCTTGCCAAAAGCAATNTACAGA
TTTCATGGAATCCCGATCAAAATTCNAACTCAATTCTTTCAACGAAATGG
GAAGGAGCAATTTGCCAAATTTGGTCTGGAANAAACNCACAAANCTAGGA
TTGGNCAAAAGTTCCTCNCCAGGA
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAGTGGACATGCATTGTTGGCTATG
GTAGAGGCCTGAGAATTCTTTACTTCCATGAAGAGAAATTCCATGAACAT
TCTGGGCAGGTTCTTATGAAGAGGCAAAAGGTTAAACCTGGCCACAGAAA
TTGTGACTGAACTCAGAGGTAGGGGAGGTAGAGGTCATAGGCCAATGGAG
CATTAGCCTGAGAGCTGGAGACAGGGGCCATAGGTCCTACAAATCTCAGG
ATGAGATTTGTCAGGATTTGGGAGTGTTTAAATCTCACTCTTGCTCCTGG
NCAGCTTCCTGGTCACATGTCCCCACAACAAACCACTTTATTTACTGAAA
TCAGGTCTAACAACTGAACCTGTAGCTCATGACTGACTAAACAAACTAGC
CCACTTGCCCCAGGAANCACATCTCTGCCTTCTAAGAGCTGGGATGACAA
ATGGACCATGACACCTGTCTGGCCTATAAATGGTTNTTGATGGGTCAAAC
TCTATTCTTCAAGCTTGGGTTGAAANTTTTATCTAATAAGCCAAACCATT
ATTTAATATTNNTCTTTNTATATGACNTTAAATTATAATGCATGAANTGT
TAANCCNTTTGTGTANACACACNATTGTGTGGAACTGGGAGGCTGGNNTA
AGTNAGAAAAAGGGNATTAAANNTTCCTTGGGAAATGGAAGTTGCAAGAC
AATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_j04.g1 MSMg01no260_j04.g1 CHROMAT_FILE:
MSMg01no260_j04.g1 PHD_FILE: MSMg01no260_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:42 2005
         (383 letters)



>mm_chr6_78762322_78763103
          Length = 782

 Score =  706 bits (365), Expect = 0.0
 Identities = 379/384 (98%), Gaps = 2/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagtggacatgcattgttggctatggtagaggcctgagaattctttacttccatgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 caaagtggacatgcattgttggctatggtagaggcctgagaattctttacttccatgaag 687

                                                                       
Query: 61  agaaattccatgaacattctgggcaggttcttatgaagaggcaaaaggttaaacctggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agaaattccatgaacattctgggcaggttcttatgaagaggcaaaaggttaaacctggcc 627

                                                                       
Query: 121 acagaaattgtgactgaactcagaggta-ggggaggtagaggtcataggccaatggagca 179
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 626 acagaaattgtgactgaactcagaggtagggggaggtagaggtcataggccaatggagca 567

                                                                       
Query: 180 ttagcctgagagctggagacaggggccataggtcctacaaatctcaggatgagatttgtc 239
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 566 ttagcctgagagctggagacaggggccataggttctacaaatctcaggatgagatttgtc 507

                                                                       
Query: 240 aggatttgggagtgtttaaatctcactcttgctcctggncagcttcctggtcacatgtcc 299
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 506 aggatttgggagtgtttaaatctcactcttgctcctggccagcttcctggtcacatgtcc 447

                                                                       
Query: 300 ccacaacaaaccactttatttactgaaatcaggtctaacaactgaacctgtagctcatga 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 ccacaacaaaccactttatttactgaaatcaggtctaacaactgaacctgtagctcgtga 387

                                   
Query: 360 ctgactaaacaaactagcccactt 383
           ||||||||||||||||||| ||||
Sbjct: 386 ctgactaaacaaactagcc-actt 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 782
Length adjustment: 9
Effective length of query: 374
Effective length of database: 773
Effective search space:   289102
Effective search space used:   289102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)