Query= MSMg01no260_l08.b1 MSMg01no260_l08.b1 CHROMAT_FILE:
MSMg01no260_l08.b1 PHD_FILE: MSMg01no260_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:53 2005
(301 letters)
>mm_chr6_84111031_84111731
Length = 701
Score = 518 bits (268), Expect = e-151
Identities = 292/300 (97%), Gaps = 2/300 (0%)
Strand = Plus / Plus
Query: 1 gttttcttccttgccttattgtactggctaggcctgtagttgggtgagttatgtgataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttcttccttgccttattgtactggctaggcctgtagttgggtgagttatgtgataca 260
Query: 61 tttttgaaagtattatttttgttcctagtttttttaaaaaatgaatatttttggctcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttgaaagtattatttttgttcctagtttttttaaaaaatgaatatttttggctcatc 320
Query: 121 aaggagtatgaaacctatgaggtaaatgacaacttgatcattaacgtttgttatcaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggagtatgaaacctatgaggtaaatgacaacttgatcattaacgtttgttatcaggaa 380
Query: 181 cgttgtttcattgaaggcttttcatgtatcccatgaaatggtcacgtgattttcacggtc 240
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 381 cgctgtttcattgaaggcttttcatgtatcccatgaaatggtcatgtgattttcacagtc 440
Query: 241 acgtgactacata-cctttgctctgttactgtgactcactttcgcttgctttcctttcct 299
| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgacttc-tctcctttgctctgttactgtgactcactttcgcttgctttcctttcct 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_l08.g1 MSMg01no260_l08.g1 CHROMAT_FILE:
MSMg01no260_l08.g1 PHD_FILE: MSMg01no260_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:53 2005
(511 letters)
>mm_chr6_84265608_84266518
Length = 911
Score = 949 bits (491), Expect = 0.0
Identities = 506/511 (99%)
Strand = Plus / Minus
Query: 1 ttgtgcatgctcatcccagcaacgtgccagagttctccatgctcagactgtaggaatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttgtgcatgctcatcccagcaacgtgccagagttctccatgctcagactgtaggaatgta 652
Query: 61 gaagtgggctgctgtctatggatgtcatactcagaatgtagacagcatcgtgaggtctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaagtgggctgctgtctatggatgtcatactcagaatgtagacagcatcgtgaggtctca 592
Query: 121 gagagctttgtgcatcaaagccctgtccctgtccacagtgtgagccatgggtggggatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gagagctttgtgcatcaaagccctgtccctgtccacagtgtgagccatgggtggggatgg 532
Query: 181 gctaagaagcaaggaatgaatggtgagaagtaaggtgtcaatggggcaccagtggagaga 240
||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct: 531 gctaagaagcaaggaatgaattgtaagaagtagggtgtcaatggggcaccagtggagaga 472
Query: 241 caaagagaggcaccaccgggctggttgctgagggctgaggccctcagaatttgattgggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caaagagaggcaccaccgggctggttgctgagggctgaggccctcagaatttgattgggt 412
Query: 301 tcaagacaagacaattgaaccaatgcccagggaactaagtgggctccccactggttttgg 360
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 411 tcaagacaagacaattgaaccaatgcccagggaactaagtgggcttcgcactggttttgg 352
Query: 361 gcccactgtcactcaggcctgcatgtgttcctgaggaaaaactgtgaggattacccaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gcccactgtcactcaggcctgcatgtgttcctgaggaaaaactgtgaggattacccaggt 292
Query: 421 gacgtccaccatactaaggggtctgaagaccccacaaatgtttcagctcatattgaatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gacgtccaccatactaaggggtctgaagaccccacaaatgtttcagctcatattgaatgt 232
Query: 481 aaagactttctctcttatgcttataattaca 511
|||||||||||||||||||||||||||||||
Sbjct: 231 aaagactttctctcttatgcttataattaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
