CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTAAAGTCTCCTATCAAATTCTTTCTCCCAAATCTACAGT
TTCTCTGATTGTTCTCAACACTAGCTATGCGATTTAGGCATAGGTGATTG
ACAACAAATCATTCCAAATTCTGCAGGGATTTTTTAAAAAACATTTTCTA
CTGTATTTACAATCATAGTTGAACATTACCAACTCTGGATAATTCTCAAA
GGGTTTATATAACTTCAAGTCTAGAGAATGAGGTGACTTCTTGTGAATTT
AACATCCAGCTGTGGATACCTGTTGAGAACAGTTTTTTTTTTAATTTTAT
AATTTGGTAACTGTATATTATTATGACCAGTCCCAAATGTAATTTCTGAT
TCTGCTCAATTAAAAACAGCCATTGCCACCTAATAAGCATACTCACATGA
GACATACTAACCATACTCAGCAGGTTGCATTTCTATGTTAATTTATATAT
TTGTAACAATAGTTAAAGAAAAATTACTTATGAACTTGAGAGAACAGGAT
AGGAGCATTGAAAGGTTGGAAAGAGAAAAAATGAGAGAGGAAATGATGAA
AATATATTTTAATTAAATAAAAAACTACAGTATTTTCAGCCAACTGTGTA
GAAAGTGAAGAGTTTTAGTGAGCACAATGACAAGACTTCATTATAATAAT
AAAGGCGACTGTCATTTTAGAAATCACTAC

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCTTATTTCTACCCTGACCAAGTATCA
TTCAGCAGAAAGTTTTTTAGTTTTCAGGAGCATGTGGACTTTCTGTTGTT
TTGGTTGTTATTGACATCTAGCCTTATTCTGATGTTATCTGATAGAATGC
ATGTGAGTATTCCCATTTTCTTGTATCTGTTGATGCTTGTTTTATAACCA
ATTATATTATCAGTTTTGGAGAATGTTCCATGAGGAGCTGAGAAGAATGT
ATATTCATTTGTTTTGGGGTGAAATGTTCTATAGATATCTTTTAAATCCA
TTTGGTTCATAACTTCTGTTCATTTCACCGTGTCTCTGTTATTTTCTATT
TCAATGACCTGTCCATTGGTGAGAGTGGAGTGTTGAAGTCCCCCACTATA
ATTATGAGAAGTTCAATGTGTGTTTTGAGATTTAGTAAAATTTCTTTTAT
GGATGTGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCA
AGAAGCAAGTTAGGGAGGAAAAGGTTTATTCAGCTTACACTTCCATACTG
CTGTTCATCATCGAGGAAGTCAGGACTGGAATTCAAGCAGGTCAGAAAGC
AGAAGCTGATGCAGAGGCAATGGAGAGATGTTGCTTACTGGCTTGCTTCC
CCTGGCTTGGTCAGCCTGCTCTCTTATAGAATGAAGACTANCACGCCAGA
TATGGCACCACC

Query= MSMg01no260_n01.b1 MSMg01no260_n01.b1 CHROMAT_FILE:
MSMg01no260_n01.b1 PHD_FILE: MSMg01no260_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:01 2005
         (663 letters)



>mm_chr6_44190364_44191426
          Length = 1063

 Score = 1199 bits (620), Expect = 0.0
 Identities = 650/662 (98%), Gaps = 7/662 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttaaagtctcctatcaaattctttctcccaaatctacagtttctctgattgt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gaattcttttaaagtatcctatcaaattctttctcccaaatctacagtttctctgattgt 878

                                                                       
Query: 65  tctcaacactagctatgcgatttaggcataggtgattgacaacaaatcattccaaattct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tctcaacactagctatgcgatttaggcataggtgattgacaacaaatcattccaaattct 818

                                                                       
Query: 125 gcagggattttttaaaaaacattttctactgtatttacaatcatagttgaacattaccaa 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gcagggatttttttaaaaacattttctactgtatttacaatcatagttgaacattaccaa 758

                                                                       
Query: 185 ctctggataattctcaaagggtttatataacttcaagtctagagaatgaggtgacttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ctctggataattctcaaagggtttatataacttcaagtctagagaatgaggtgacttctt 698

                                                                       
Query: 245 gtgaatttaacatccagctgtggatacctgttgagaacagttttttttttaattttataa 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 697 gtgaatttaacatccagctgtggatacctgttgagaacagttttttttttaa-tttataa 639

                                                                       
Query: 305 tttggtaactgtatattattatgaccagtcccaaatgtaatttctgattctgctcaatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttggtaactgtatattattatgaccagtcccaaatgtaatttctgattctgctcaatta 579

                                                                       
Query: 365 aaaacag---ccattgccacctaataagcatactcacatgagacatactaaccatactca 421
           |||| ||     ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aaaa-agttt--attgccacctaataagcatactcacatgagacatactaaccatactca 522

                                                                       
Query: 422 gcaggttgcatttctatgttaatttatatatttgtaacaatagttaaagaaaaattactt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 521 gcaggttgcatttctatgttaatttatatatttgtaacaatagttaaagaaaaattagtt 462

                                                                       
Query: 482 atgaacttgagagaacaggataggagcattgaaaggttggaaagagaaaaaatgagagag 541
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 461 atgaacttgagagaacaggataagagcattgaaaggttggaaagagaaaaaacgagagag 402

                                                                       
Query: 542 gaaatgatgaaaatatattttaattaaataaaaaactacagtattttcagccaactgtgt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaaatgatgaaaatatattttaattaaataaaaaactacagtattttcagccaactgtgt 342

                                                                       
Query: 602 agaaagtgaagagttttagtgagcacaatgacaagacttcattataataataaaggcgac 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agaaagtgaagagttttagtgagcacaatgacaagacttcattataataataaaggcgac 282

             
Query: 662 tg 663
           ||
Sbjct: 281 tg 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)