BAC Information

Click to search

BAC

Clone NameMSMg01-260O13
Chromosome6 (Build37)
Map Location 41,304,752 - 41,305,505
singlet/doubletsinglet
Overlap geneTry10
Upstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik
Downstream genePrss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260O13.T7 (MSMg01no260_o13.b1)MSMg01-260O13.TJ (MSMg01no260_o13.g1)
ACCAG403443AG403444
length1,609751
length of high quality
(start - end)		---673 (79 - 751)
definitionCHROMAT_FILE: MSMg01no260_o13.b1 PHD_FILE: MSMg01no260_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:09 2005CHROMAT_FILE: MSMg01no260_o13.g1 PHD_FILE: MSMg01no260_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGAAGAAAGTGAGGANCNCNTGTTNNTTNTCTNTATTGTAATAAATTTTT
ACTCAAAAAAGAAGTGTGGGAGAGGAGNAGTGGAGATGTTTTTCACGCCA
AAAAGAGAAGTTTGTGTGTTGGTGAAAGGGCGAGCGGATGGGTGGTGTAG
AATTTCNCTTATTTGATTAGTGAATTGTTATATTACCCGCTTACTGTGAT
ATANAGTGTAGGATTGATTGAGAGGGAGTTGAGCAGAGAGAAGAGGTAGT
GGTAGATGGAAGAGGATATGCTATAAATATTTACGGTATTAGATGATTTA
ATATATACGAATAGTGTCAATATGATGTGGTTAATTAGTTATTTATGTAG
TATATGTCTTATATTAGATGATGTTTAATGATAGTAGGATGGCGAGGGAA
GATGAGATGAAATATAAGCAGTATGATGAATTGAGCAAAACGAGGAGTCA
AGAAGTCAGTGCGTACAACAAATATATGAGAATAATTATGAAATATAATA
TAACACTCTAATTTAAATATAACGAAGTAAAGATAGCAATAAGAAGTATG
TAATATACTATAGTAGAGACGAAGGACGACAGGGATGTGCGTAGAATTAT
ATAGTCATCATTATNCGAATTCTGCGTTAATAACTGTCTCGCTATAATCT
AGNTATTCGTGACTATGCAGTAAGACCACGGCAAGGATAAGAGAGGAGAA
TATGATATGTATTTCAATGATAGTTGAGATATATGTATGGATGTGTGTGT
GTCGTCTCCACCCCCTCTGCTGTNTGTGTAGNGGAGTGATGTTACTATAA
AAGTGAGAATAAATAATAATCACTGTAGGAGGAGTCACATGATAGAGAGT
GATGGTCATCGTTTAGCGAGGTGTCGATGGGATAAAAGATAGACATACGC
TGGCGCGTCGTGTGCATTCTTGACACAGTAACTGATGCTGTATTAGTGAA
TTGTGATTTGTGATGTAATCAGGCTTAAGACTGGTATCAGATACATGTGC
TATGCGCGCTAGTGTTAGTGTGAGATCGATAGTGCGACGATGTTATGTGA
GTAGTTACTGTCGATAAGTTCAATAAANGCAAAGATGATGATAAGTGTGA
TGTGTATNATCGAGCAGTCANTCTCTAANTNATATAGATGTATAGTCAGA
GTTATACACTGATTATACAGCACCTCTAGCATGCGTATAGTGAGATGATG
TCGTGGTCGAGATGTGATGAATGCGACGATGAGAGAATGCGGAATGTCTA
TATATATGAACATCGATAGAGTCACAGTCTGATAATAGATCTGATGGTTN
ACAGTACGACCAGACACGACTCATCGTATACTCATAATAAAGCTCATGTG
GTGCATCCTGCGCGTGTGTGTTTAGTATAGTAGATAGCACTATATGCTCT
GTAGATCGTAATGTAGTCTGTAACACTTATTTTNATATATTATAATCGGT
CTTTCGTGATGCTANCATATATACGAGCGCTACTGCTGNGTCGATACTAT
TGGATATATGNTGTGATAGTGTATCAGGATGACTAGATTATCATTACGAC
CAGGATAGATGTCTCANTGAGATCANTATATGTGACGAATGTGCTAGCGT
GATCAGTGA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCGGCAGGTGTATCCTCCAA
CGATCTTGTCATCATCATCCACAGGGAAAGCAACTTCAATTAAAAAAAAA
GATCATTGAGGAGAAAATTCATGAAGGTGCTGGAAGGTGACTCCTTCAGG
CCTCTGACTAGGCATCCTTAAAGAGTGCAATAATAGAAGGCAAGAAGGTA
ACACTGTATCCCTGTAGGAAAAAATAAATGTTTGCCCAACATAGAGAGAC
TGTAGAGGAATACTCCTAAATTGAAAGTTAAAATTCTCATTATGCTGGAC
ATTATTATCTTAAATTTACAGTAGCAAAGTACTCTGTAGGTGACTACATT
TTCATGGGTTACTAGGGAAAGGGCAAGTGATGTTCTCAGCTTGCAGGAAT
AGGATGCAGAGATGGTTGATTCACTACCTCCCTTGATCTTTCATTGATGT
GTCTTACAGAGCTTAAATAGCTTAATGCAGTTTGAACTGCATCTTCAAAA
TATCCTGAAAATATAGAGAGAGGAATGTGATGTTATTCTGGAAGATAATT
GTTTTTTAAGTTTAATTGCATGTTTATGTATCCAATACATTGTAATATTT
AATATATAATATATATGATATATATACACATATTATATATATATACATAT
ATATATAATATATATATATAATATATATATATATGGAGAGAGAGAGATGC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_o13.g1 MSMg01no260_o13.g1 CHROMAT_FILE:
MSMg01no260_o13.g1 PHD_FILE: MSMg01no260_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:09 2005
         (673 letters)



>mm_chr6_41304646_41305718
          Length = 1073

 Score = 1036 bits (536), Expect = 0.0
 Identities = 659/756 (87%), Gaps = 89/756 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcggcaggtgtatcctccaacgatcttgtcatcatcatccacagggaaagcaacttca 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 860 tctcggcaggtgtatcctccaactatcttgtcatcatcatccacagggaaagcaacttca 801

                                                                       
Query: 61  att-aaaaaaaaagatcattgaggagaaaattcatgaaggtgctggaaggtgactccttc 119
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 attaaaaaaaaaagatcattgaggagaaaattcatgaaggtgctggaaggtgactccttc 741

                                                                       
Query: 120 aggcctctgactaggcatccttaaagagtgcaataat------------agaaggcaaga 167
           |||||||||||||||||||||||||||||||||||||            |||||||||||
Sbjct: 740 aggcctctgactaggcatccttaaagagtgcaataatagaaggcaagaaagaaggcaaga 681

                                                                       
Query: 168 aggtaacactgtatccctgtaggaaaaaataaatgtttgcccaacatagagagactgtag 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggtaacactgtatccctgtaggaaaaaataaatgtttgcccaacatagagagactgtag 621

                                                                       
Query: 228 aggaatactcctaaattgaaagttaaaattctcattatgctggacattattatcttaaat 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aggaatactcctaaattgaaagttaaaattctcattatgctggacattattatcttaaat 561

                                                                       
Query: 288 ttacagtagcaaagtactctgtaggtgactacattttcatgggttactagggaaagggca 347
           ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct: 560 ttacagtagcaaagtactctgtatgtgactacattttgatgggttaccagggaaagggca 501

                                                                       
Query: 348 agtgatgttctcagcttgcaggaataggatgcagagatggttgattcactacctcccttg 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agtgatgttctcagcttgcaggaataggatgcagagatggttgattcactacctcccttg 441

                                                                       
Query: 408 atctttcattgatgtgtcttacagagcttaaatagcttaatgcagtttgaactgcatctt 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atctttcattgatgtgtcttacagagcttaaatagcttaatgcagtttgaactgcatctt 381

                                                                       
Query: 468 caaaatatcctgaaaatatagag------------------------------------- 490
           |||||||||||||||||||||||                                     
Sbjct: 380 caaaatatcctgaaaatatagagattttaatgtacccacaagctttatagttcatctgca 321

                                                                       
Query: 491 -------------------------------------agaggaatgtgatgttattctgg 513
                                                |||||||||||||||||||||||
Sbjct: 320 tattaaggacaaagagagagtaggctttacataggacagaggaatgtgatgttattctgg 261

                                                                       
Query: 514 aagataattgttttttaagtttaattgcatgtttatgtatccaatacattgtaatattta 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagataattgttttttaagtttaattgcatgtttatgtatccaatacattgtaatattta 201

                                                                       
Query: 574 atatataatatatatgatatatatacacatattatatatatatacatatatatataatat 633
           |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||
Sbjct: 200 atatataatatatatgatatatatacacgtattatatatatatatatacatatat-atat 142

                                               
Query: 634 atatatataatatatatatatatggagagagagaga 669
           |||||||| |||||||||||||| ||||||||||||
Sbjct: 141 atatatat-atatatatatatatagagagagagaga 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |