BAC Information

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BAC

Clone NameMSMg01-261E02
Chromosome6 (Build37)
Map Location 140,026,700 - 140,217,455
singlet/doubletdoublet
Overlap genenone
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
Downstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875, Pde3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261E02.T7 (MSMg01no261_e02.b1)MSMg01-261E02.TJ (MSMg01no261_e02.g1)
ACCAG403695AG403696
length729704
length of high quality
(start - end)
400 (54 - 453)461 (83 - 543)
definitionCHROMAT_FILE: MSMg01no261_e02.b1 PHD_FILE: MSMg01no261_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:36 2005CHROMAT_FILE: MSMg01no261_e02.g1 PHD_FILE: MSMg01no261_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,026,700 - 140,027,096)(140,216,995 - 140,217,455)
sequence
TTTGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAG
ATCCGCGGAATTCCAGGTGCTTGCTGGGCATGATTTCATAGGAGGAAAGG
AAGGTAAATCTGTAATTTGGCCACCAGGCTACACAACTACCTCAAGGGTG
GCAGAGGTAGGGGTCACATGGTCTACATGAGCTGGGACATACAGGCCCAG
AGGAAGGAGGGAAGAGTCTTACTCCGGCCAGTCTCAGGAAAAGATTTTGG
GGTTTAGACAGACACATTGCAGCCTCACTCTTGCTCCAGACTGCTTCCCC
CAGTCACATGGCTTTCCAGTCCCACATCTCCCCCTTTTTGTTTTATAAAG
AGGAGATGGCATCATGGTCAACGGCCTTTATCTTGGGAACGGTTTGGTAT
TGGATCAGAACCTGATTGGCAGACACTTTTGCAGTGCTACCTATTTTCCA
TGTTAGACATGGGACGGGACAGGGTGCCAGGAGGGGTAGGGCTCCAATGA
CCAGTATGTGTTCTAGAAGGTAGAGAGTGCCAGCTACCAGATGGATTGAG
CACCATGTCGTATCGGTGTTGGGTACACTATGTGTCTGCAGATTTCATAG
CGCATCAGCCCAGCACCTGCAAGTTTTGTTCTCCCTTGTCCTGAATTATC
GGAGTCCGTACACTGTATTCCCTCTTCTATTCTTACGCCCAGCCCCCGCT
CGGCCCCATTTTCCCCACTTATTCCTCTG
NNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTGAGGGTAAACAT
CTCCTTTGTTTCAGGGGGGGGGGAACTCTTGACTGAGGCTTTTAGATATG
CAAATGAAAGGCTTCTGTCAGAAGTTGTCTCTTTTTTTTCTCTTATTACA
GAGGAGGAAGGCCTAAAGGTGGAACCCTAACCCGGAGCAGATGTTTCCCC
GAGGAGCGCAAAGCTGAGCAGTTTCGAAGCTGCAGAGCCTCCTTATGCTG
TCTTAAGAGGATCCTTCCCCCTCTAAATGTCGACCCTGGAGTCTGGAAAT
TATTGTTTATTTCTCCGGAGATGTCTCCCTCAGCCACAGCATCTGCCAAA
GATTAGGAGGGAAGGTGCCTCTGCAGCAGGAAGGATGCATAGGAACAGCT
GTAACTAGAGTCTTTAGGAGGCAAGCTAGACCTCTGGCAGCACCACAGAC
TGGGTTCTGTTACCTGTGCCAGCGCTCCAGTGCCCAGGAGTGAAGCAGGG
GCGTGTTTAAGTCGGTAGCCTATTTGCTTAGCTTGTGCAAAGTTAGGGGA
TTTGAGTCCTCTATCACATCAACCAGGCATCACAGCAGATTCCTAGAATC
CCGGAACCTCAGGTAGGATAGGGCGGAGGGCTAGAAGTTAACAGGTCATG
CTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_e02.b1 MSMg01no261_e02.b1 CHROMAT_FILE:
MSMg01no261_e02.b1 PHD_FILE: MSMg01no261_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:36 2005
         (400 letters)



>mm_chr6_140026497_140027296
          Length = 800

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggtgcttgctgggcatgatttcataggaggaaaggaaggtaaatctgtaat 63
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 ggaattccaggtgcttgctgggcatgatttcataggaagaaaggaaggtaaatctgtaat 263

                                                                       
Query: 64  ttggccaccaggctacacaactacctcaagggtggcagaggtaggggtcacatggtctac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggccaccaggctacacaactacctcaagggtggcagaggtaggggtcacatggtctac 323

                                                                       
Query: 124 atgagctgggacatacaggcccagaggaaggagggaagagtcttactccggccagtctca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 atgagctgggacatacaggcccagaggaaggagggaagagtcttactcctgccagtctca 383

                                                                       
Query: 184 ggaaaagattttggggtttagacagacacattgcagcctcactcttgctccagactgctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaaaagattttggggtttagacagacacattgcagcctcactcttgctccagactgctt 443

                                                                       
Query: 244 cccccagtcacatggctttccagtcccacatctccccctttttgttttataaagaggaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccccagtcacatggctttccagtcccacatctccccctttttgttttataaagaggaga 503

                                                                       
Query: 304 tggcatcatggtcaacggcctttatcttgggaacggtttggtattggatcagaacctgat 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggcatcatggtcaatggcctttatcttgggaacggtttggtattggatcagaacctgat 563

                                                
Query: 364 tggcagacacttttgcagtgctacctattttccatgt 400
           |||||||||||||||||||||||| ||||||||||||
Sbjct: 564 tggcagacacttttgcagtgctacatattttccatgt 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no261_e02.g1 MSMg01no261_e02.g1 CHROMAT_FILE:
MSMg01no261_e02.g1 PHD_FILE: MSMg01no261_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:36 2005
         (461 letters)



>mm_chr6_140216795_140217655
          Length = 861

 Score =  891 bits (461), Expect = 0.0
 Identities = 461/461 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttgagggtaaacatctcctttgtttcaggggggggggaactcttgactgaggcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agctttgagggtaaacatctcctttgtttcaggggggggggaactcttgactgaggcttt 602

                                                                       
Query: 61  tagatatgcaaatgaaaggcttctgtcagaagttgtctcttttttttctcttattacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tagatatgcaaatgaaaggcttctgtcagaagttgtctcttttttttctcttattacaga 542

                                                                       
Query: 121 ggaggaaggcctaaaggtggaaccctaacccggagcagatgtttccccgaggagcgcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaggaaggcctaaaggtggaaccctaacccggagcagatgtttccccgaggagcgcaaa 482

                                                                       
Query: 181 gctgagcagtttcgaagctgcagagcctccttatgctgtcttaagaggatccttccccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctgagcagtttcgaagctgcagagcctccttatgctgtcttaagaggatccttccccct 422

                                                                       
Query: 241 ctaaatgtcgaccctggagtctggaaattattgtttatttctccggagatgtctccctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctaaatgtcgaccctggagtctggaaattattgtttatttctccggagatgtctccctca 362

                                                                       
Query: 301 gccacagcatctgccaaagattaggagggaaggtgcctctgcagcaggaaggatgcatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gccacagcatctgccaaagattaggagggaaggtgcctctgcagcaggaaggatgcatag 302

                                                                       
Query: 361 gaacagctgtaactagagtctttaggaggcaagctagacctctggcagcaccacagactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaacagctgtaactagagtctttaggaggcaagctagacctctggcagcaccacagactg 242

                                                    
Query: 421 ggttctgttacctgtgccagcgctccagtgcccaggagtga 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggttctgttacctgtgccagcgctccagtgcccaggagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)