BAC Information

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BAC

Clone NameMSMg01-261H15
Chromosome6 (Build37)
Map Location 100,390,751 - 100,563,268
singlet/doubletdoublet
Overlap geneShq1, LOC625221
Upstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
Downstream geneBC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261H15.T7 (MSMg01no261_h15.b1)MSMg01-261H15.TJ (MSMg01no261_h15.g1)
ACCAG403853AG403854
length718713
length of high quality
(start - end)		567 (76 - 642)603 (78 - 680)
definitionCHROMAT_FILE: MSMg01no261_h15.b1 PHD_FILE: MSMg01no261_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:52 2005CHROMAT_FILE: MSMg01no261_h15.g1 PHD_FILE: MSMg01no261_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,562,702 - 100,563,268)(100,390,751 - 100,391,353)
sequence
CTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCCATGAAAATCGCTTTGATAAGGCTTGTGGAAGCACAGCCTTT
AAAGAGAGCTTATGAGTCCCCTTTGCCCAAGCTGTCCTGTATGTGAAAGG
CATGCTTGTTGAAAACCTCATCTGAATATTCTTTCTCAGTTGCTTAAAGA
CATGAATCACATGTTTGAACATTCTCCTGTCAGTATTTAAGGGCTGCCTG
GTAGATCATGCCCACCAGGTTTTATTGATCATATAACATGTTTCTGGTGG
ACACATGGAAAAAGAGGTGGTGTGAGGGGTGAATAACTGCTCCTCCACGT
AGACCAGTACTGCGCGCACAGTGGGCTCGCACTATTGAGTTAGTGACTGG
GCCAGTACTCTTCCGACCACCCTAAATCCTGCATTTTCTGCTAATCTGGT
TATATTAAGAAGGTATGAGGCCTTGGGAGGGAGCCCTTGGGGCTGTCACA
CTGTAGAGAAGTAAAGTCCAAGTGAAGAGGGTTTTTTTTCTGGCAAAGAC
CTGTGATTGCTACTTGGAACTCTTTGTAATCAGTCAGCCAGTTATCTAGG
GTGCTGGCTACTTTTTTGTCAATTTGATACATGCTGGAGTCATCTAGAAA
GATGGAAGGACAATTCAGAAATTGCCTCTATCAGATTGGCCTATAGGTAA
ATCTGTGGGTGTGTTTTC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCCTAGAAATGCATGAGCTA
ATGCACAAGCCACTTCGCTTCTTGGTTCCCCAGTTTCTCTGTTTCCCAGT
CTGGTTCACTTGTGTGATTCTAGCAGCATCCTCTGCTACGGGTGATTTCT
AGACCCTCCCCTACTTTCTTTCTGGTGCTTCCTCTTGTCCTTGTTCCACC
TCTGGTCCCATTTCCATGACATGAAAAATCCCAAGAACTCTGACTCTAGA
CCGAGTTCCCAGGAACAGTTGGGAAAATGAAGAGCCGCATGAACATGACT
GGTGAGGAACTGGTATGTGGGGTGCTGAGGGGGCGGCACAGAGGCAGGGA
GAGGGTCCTCTTGACTCCCTCCTACAGTGGAGTGATAGAACTTGGTGGAT
CCAGCGTCTGAGGTACTCCCATCTGACAGACAATCTGAGGGATCGGGGAG
GGCCGTGATTTCCCAGGCACATCCAGCTGGCCCCCAAAGCAAGAGAACGG
CGGGGCCCTGACAGACTCGGGGACTAGGGAGTGCAGATGGTGGGCAGAGA
GCATCCTCTACTCTCTCCAGATGATCACAGGCCAGACTGAACGGAGGCTC
CTAAGACATAATAACTGTAATAACATCGGACCCACACCTGTGCTTTACAG
AGCACTTTGCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_h15.b1 MSMg01no261_h15.b1 CHROMAT_FILE:
MSMg01no261_h15.b1 PHD_FILE: MSMg01no261_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:52 2005
         (567 letters)



>mm_chr6_100562544_100563510
          Length = 967

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaggcttgtggaagcacagcctttaaagagagcttatgagtcccctttgcccaagctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 taaggcttgtggaagcacagcctttaaagagagcttatgagtcccctttgcccaagctgt 666

                                                                       
Query: 61  cctgtatgtgaaaggcatgcttgttgaaaacctcatctgaatattctttctcagttgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cctgtatgtgaaaggcatgcttgttgaaaacctcatctgaatattctttctcagttgctt 606

                                                                       
Query: 121 aaagacatgaatcacatgtttgaacattctcctgtcagtatttaagggctgcctggtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaagacatgaatcacatgtttgaacattctcctgtcagtatttaagggctgcctggtaga 546

                                                                       
Query: 181 tcatgcccaccaggttttattgatcatataacatgtttctggtggacacatggaaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcatgcccaccaggttttattgatcatataacatgtttctggtggacacatggaaaaaga 486

                                                                       
Query: 241 ggtggtgtgaggggtgaataactgctcctccacgtagaccagtactgcgcgcacagtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggtggtgtgaggggtgaataactgctcctccacgtagaccagtactgcgcgcacagtggg 426

                                                                       
Query: 301 ctcgcactattgagttagtgactgggccagtactcttccgaccaccctaaatcctgcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctcgcactattgagttagtgactgggccagtactcttccgaccaccctaaatcctgcatt 366

                                                                       
Query: 361 ttctgctaatctggttatattaagaaggtatgaggccttgggagggagcccttggggctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttctgctaatctggttatattaagaaggtatgaggccttgggagggagcccttggggctg 306

                                                                       
Query: 421 tcacactgtagagaagtaaagtccaagtgaagagggttttttttctggcaaagacctgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcacactgtagagaagtaaagtccaagtgaagagggttttttttctggcaaagacctgtg 246

                                                                       
Query: 481 attgctacttggaactctttgtaatcagtcagccagttatctagggtgctggctactttt 540
           ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||
Sbjct: 245 attgctacttggaactctttgtagtcagtcagccagttacctagggtgctggttactttt 186

                                      
Query: 541 ttgtcaatttgatacatgctggagtca 567
           |||||||||||||||||||||||||||
Sbjct: 185 ttgtcaatttgatacatgctggagtca 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_h15.g1 MSMg01no261_h15.g1 CHROMAT_FILE:
MSMg01no261_h15.g1 PHD_FILE: MSMg01no261_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:53 2005
         (603 letters)



>mm_chr6_100390551_100391553
          Length = 1003

 Score = 1065 bits (551), Expect = 0.0
 Identities = 590/603 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacccctagaaatgcatgagctaatgcacaagccacttcgcttcttggttccccagtttc 60
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cacccctagaaatgcatgaactaatgcacaagccacttcccttcttggttccccagtttc 260

                                                                       
Query: 61  tctgtttcccagtctggttcacttgtgtgattctagcagcatcctctgctacgggtgatt 120
           || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 261 tccgtttcccagtctggttcacttgtgtgattctatcagcatcctctgctacgggtcatt 320

                                                                       
Query: 121 tctagaccctcccctactttctttctggtgcttcctcttgtccttgttccacctctggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagaccctcccctactttctttctggtgcttcctcttgtccttgttccacctctggtc 380

                                                                       
Query: 181 ccatttccatgacatgaaaaatcccaagaactctgactctagaccgagttcccaggaaca 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatttccatgatatgaaaaatcccaagaactctgactctagaccgagttcccaggaaca 440

                                                                       
Query: 241 gttgggaaaatgaagagccgcatgaacatgactggtgaggaactggtatgtggggtgctg 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgggaaaatgaagagctgcatgaacatgactggtgaggaactggtatgtggggtgctg 500

                                                                       
Query: 301 agggggcggcacagaggcagggagagggtcctcttgactccctcctacagtggagtgata 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggggcggcacagaggcagggagagggtcctcttgactccctcctacagtggagtgata 560

                                                                       
Query: 361 gaacttggtggatccagcgtctgaggtactcccatctgacagacaatctgagggatcggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 gaacttggtggatccagcgtctgaggtactcccatctgacagacaatctgagggatcagg 620

                                                                       
Query: 421 gagggccgtgatttcccaggcacatccagctggcccccaaagcaagagaacggcggggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||
Sbjct: 621 gagggccgtgatttcccaggcacatccagctggcccccaaagcaagagaacagtagggcc 680

                                                                       
Query: 481 ctgacagactcggggactagggagtgcagatggtgggcagagagcatcctctactctctc 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgacagactcggggacaagggagtgcagatggtgggcagagagcatcctctactctctc 740

                                                                       
Query: 541 cagatgatcacaggccagactgaacggaggctcctaagacataataactgtaataacatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagatgatcacaggccagactgaacggaggctcctaagacataataactgtaataacatc 800

              
Query: 601 gga 603
           |||
Sbjct: 801 gga 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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