Query= MSMg01no261_k05.b1 MSMg01no261_k05.b1 CHROMAT_FILE:
MSMg01no261_k05.b1 PHD_FILE: MSMg01no261_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:04 2005
(592 letters)
>mm_chr6_139993128_139994124
Length = 997
Score = 1035 bits (535), Expect = 0.0
Identities = 581/599 (96%), Gaps = 7/599 (1%)
Strand = Plus / Plus
Query: 1 gagattacggggaaggagacagtaggccccattctccaatcctgattgatctgaaaagaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 199 gagattacggggaaggagacagtaggccccattctccaatcctgactgatctgaaaagaa 258
Query: 61 aagtgcttcagatcttgagtccatgcacccggaaaaagagagccggctctgactcgtcca 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 259 aagtgcttcagatcttgagtccatgcacccggaaaaaaagagccggctctgactggtcca 318
Query: 121 cattggggcagacaagagcccgtgcaggaatttctaaactgcatatcttccccagctact 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 319 cattggggcagacaagagcccgtacaggaatttctaaactgcatatcttccccagctatt 378
Query: 181 ggtgatttgttatttattatttccatctgtgtgcagtggtgtttacatgtttgtgcttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtgatttgttatttattatttccatctgtgtgcagtggtgtttacatgtttgtgcttgt 438
Query: 241 gcgagtgggggatggtatacacgtgcgtgcggaagcggcatgtccgtgttgggtgacctc 300
|||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 439 gcgagtgggggatggtattcccgtgcgtgcagaagcggcatgtccgtgttgggtgacctc 498
Query: 301 tgagagtatctcattgtaccctcagccccagaatatggctagactggctaagttcccatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgagagtatctcattgtaccctcagccccagaatatggctagactggctaagttcccatg 558
Query: 361 atcctcct--ccccacacagcacttaaagatgggtggccatgccagcttcttttcctcgg 418
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 559 atcctcctgtccccacacagcacttacagatgggtggccatgccagcttcttttcctcag 618
Query: 419 gtgctgggaatttaaactcctgtccccatgcttgctcagcaagcactttacctgctgagc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtgctgggaatttaaactcctgtccccatgcttgctcagcaagcactttacctgctgagc 678
Query: 479 catctcctcacccctgactctttcgtttgatttgagaattctctgtgt----cttcaaaa 534
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 679 catctcctcacccctgactctttcgtttgatttgagaattctctgtgtatgtcttcaaaa 738
Query: 535 atacacagttttggagcccatccagaagcagaaattcattctccc-tctcccctctccc 592
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 739 atacacagttttggagcccatccagaaacagaaattcattctcccctctcccctctccc 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 997
Length adjustment: 10
Effective length of query: 582
Effective length of database: 987
Effective search space: 574434
Effective search space used: 574434
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_k05.g1 MSMg01no261_k05.g1 CHROMAT_FILE:
MSMg01no261_k05.g1 PHD_FILE: MSMg01no261_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:04 2005
(491 letters)
>mm_chr6_140147298_140148188
Length = 891
Score = 926 bits (479), Expect = 0.0
Identities = 488/491 (99%)
Strand = Plus / Minus
Query: 1 accatgtagaccagactggcctcaaaatcacagagatctgcctgtctttgccttccaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 accatgtagaccagactggcctcaaaatcacagagatctgcctgtctttgccttccaggg 587
Query: 61 gctgagatgaaaggcctgctttgcttcgactcatgaaatcacaggttgttattcccaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gctgagatgaaaggcctgctttgcttcgactcatgaaatcacaggttgttattcccaaag 527
Query: 121 atctaagtaacaatgtagaggacacttgtgcaagatggcgtcatcttggactttgagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atctaagtaacaatgtagaggacacttgtgcaagatggcgtcatcttggactttgagatt 467
Query: 181 tgcatattttattggattctggtttttgagaaataaattcaactcaaatcttaaatgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgcatattttattggattctggtttttgagaaataaattcaactcaaatcttaaatgtct 407
Query: 241 ttcctcatttgtcagatatggaggtgttgggcgggagagatgacttagtgaatagggtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttcctcatttgtcagatatggaggtgttgggcgggagagatgacttagtgaatagggtgc 347
Query: 301 ttgctgggaaaggatcaagacttgagtttggacctcagcatacaggcacatgtgggtgtg 360
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 346 ttgctgggaaaggatcaagacttgagtttggacctcagcatacaggtagatgtgggtgtg 287
Query: 361 atgcctgctggggaggtagaagagacaggcagaattccaggacttcctgattacccagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atgcctgctggggaggtagaagagacaggcagaattccaggacttcctgattacccagtg 227
Query: 421 cttcggaaatggtgagttccaggttcagtgagaaaccctgttgcataaaataagggctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cttcggaaatggtgagttccaggttcagtgagaaaccctgttgcataaaataagggctat 167
Query: 481 gccttctgtaa 491
| |||||||||
Sbjct: 166 gacttctgtaa 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
