BAC Information

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BAC

Clone NameMSMg01-262C24
Chromosome6 (Build37)
Map Location 38,556,892 - 38,557,517
singlet/doubletsinglet
Overlap geneLuc7l2
Upstream geneYbx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228
Downstream geneKlrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262C24.T7 (MSMg01no262_c24.b1)MSMg01-262C24.TJ (MSMg01no262_c24.g1)
ACCAG404363AG404364
length762762
length of high quality
(start - end)
651 (32 - 682)500 (66 - 565)
definitionCHROMAT_FILE: MSMg01no262_c24.b1 PHD_FILE: MSMg01no262_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:46 2005CHROMAT_FILE: MSMg01no262_c24.g1 PHD_FILE: MSMg01no262_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCATTAAA
CCTTTCCGTAAAGTATCAAAAAATGATCACACTATAATAAAATTCTGCCG
GGCATGGTGGCGCACGCCTTTAGTCCCAGCACTTGGGAGGCAGAGGCAGG
CGGATTTCTGAGTTCGAGCCAGTCTGGTCTACAAAGTGAGTTCCAGGACA
GCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAGAGATAAT
AAAATTCTAACTGTTCCTAGTACTACTATCTTCATTCTAACCCCATCTTC
AAAGATATATAAACAAAACACCCTCAGATATGCAACCAGGAAAAAACAAA
ACAGAAACACATTATGTAGAACCTAACTATATTGGTTAGCATAGAATATA
TACTTTTCAACACCTAAAATGAATTAACAACAAATATCACATTTATTTAG
TTCTTTACAGGTGATACAGAATGTTTATACATAATTTATCTCAATCAAGG
TTAGAATTATAATCAGAGGCACTGCCAAGTCCTGCATAATACTTATTTTT
TTTTAAAGTTGGAGTTTAAAGTTGGATCTCAATATGCTATGTTTGCATGC
TACTAACCCAGAAAACACAATACTTTCAGAAAAACATAAGGCAAGATAAA
AAATACTACTATAACCAGTTTGAAAAATATAGATAAGGAGAGTATTATAG
TTTGGATATAAAACAGTCCAAAAGGCTCATGTACTGTTGAAGACTTGAAA
CTGGTGATGGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAAAAAGTGACCCCCACAGGCCCTGTAACATCTCT
CTTTTTTTTTCTAGATACATTAAGTCTCTGTAACTGTCTTTGTTTGGGTT
TTATTTCTGTGAATAAACACTGTGACCACAACAACTTTTATAAAGGAAAA
TATTTAATTGGGGCTGGCTTACAGTTTCAGAAGTTTTGTCCATTATCATT
GTCACGGTGGGAAACGTGGGCATGCAGGCAGAAATAGTGCTAGAGAAGGA
GCTGAGAGTTCTTTATCTTGATCTGCAGGCAGCAAGGAGAGACTGTGACA
CATTGGCCAGACTTGAGCTCTTAAGACCTCAGAGCTCACCAGTAACACAC
TTCCTCCAGCAAGGCCATACCTCTAGTAGTACTATTCCCTATGACCAAAC
ATTCAAGCATGTGTCTATGAGGACCATTCCTATTCAAATCACCACAGTAA
TCATTGACGAGTTAACTCTCCTTCCTAAGCGTTGGTGTGTTCTCATTTGT
GGAATGTGAAATAGAAGATGGAAGTGCTTAGTGTCTGATGTGAATAGTAG
CTGCTGTCATCATGGTCTAGTTACATAACTAGGGGAGTTAAATACAGATT
TTATGCCTCCATGAACTGGTGACATTGAGATCACTGCCCTTTTCTCTAGT
TCAACTGCTTCTGTTCCCCATGTGGTACCCAAGTATTTTTACTCCCGATC
TCCCAATATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_c24.b1 MSMg01no262_c24.b1 CHROMAT_FILE:
MSMg01no262_c24.b1 PHD_FILE: MSMg01no262_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:46 2005
         (651 letters)



>mm_chr6_38556482_38557533
          Length = 1052

 Score = 1195 bits (618), Expect = 0.0
 Identities = 624/626 (99%), Gaps = 1/626 (0%)
 Strand = Plus / Minus

                                                                        
Query: 27   gtaaagtatcaaaaaatgatcacactataataaaattctgccgggcatggtggcgcacgc 86
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gtaaagtatcaaaaaatgatcacactataataaaattctgccgggcatggtggcgcacgc 977

                                                                        
Query: 87   ctttagtcccagcacttgggaggcagaggcaggcggatttctgagttcgagccagtctgg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  ctttagtcccagcacttgggaggcagaggcaggcggatttctgagttcgagccagtctgg 917

                                                                        
Query: 147  tctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaacc 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  tctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaacc 857

                                                                        
Query: 207  aaaaagagataataaaattctaactgttcctagtactactatcttcattctaaccccatc 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  aaaaagagataataaaattctaactgttcctagtactactatcttcattctaaccccatc 797

                                                                        
Query: 267  ttcaaagatatataaacaaaacaccctcagatatgcaaccagg-aaaaaacaaaacagaa 325
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 796  ttcaaagatatataaacaaaacaccctcagatatgcaaccaggaaaaaaacaaaacagaa 737

                                                                        
Query: 326  acacattatgtagaacctaactatattggttagcatagaatatatacttttcaacaccta 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  acacattatgtagaacctaactatattggttagcatagaatatatacttttcaacaccta 677

                                                                        
Query: 386  aaatgaattaacaacaaatatcacatttatttagttctttacaggtgatacagaatgttt 445
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 676  aaatgaattaacaacaaatatcacatttatttagttctttacaggtggtacagaatgttt 617

                                                                        
Query: 446  atacataatttatctcaatcaaggttagaattataatcagaggcactgccaagtcctgca 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  atacataatttatctcaatcaaggttagaattataatcagaggcactgccaagtcctgca 557

                                                                        
Query: 506  taatacttatttttttttaaagttggagtttaaagttggatctcaatatgctatgtttgc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  taatacttatttttttttaaagttggagtttaaagttggatctcaatatgctatgtttgc 497

                                                                        
Query: 566  atgctactaacccagaaaacacaatactttcagaaaaacataaggcaagataaaaaatac 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  atgctactaacccagaaaacacaatactttcagaaaaacataaggcaagataaaaaatac 437

                                      
Query: 626  tactataaccagtttgaaaaatatag 651
            ||||||||||||||||||||||||||
Sbjct: 436  tactataaccagtttgaaaaatatag 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space:   667922
Effective search space used:   667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)