BAC Information

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BAC

Clone NameMSMg01-262E23
Chromosome6 (Build37)
Map Location 19,206,955 - 19,207,508
singlet/doubletsinglet
Overlap genenone
Upstream geneCftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262E23.T7 (MSMg01no262_e23.b1)MSMg01-262E23.TJ (MSMg01no262_e23.g1)
ACCAG404447AG404448
length714761
length of high quality
(start - end)		659 (40 - 698)684 (68 - 751)
definitionCHROMAT_FILE: MSMg01no262_e23.b1 PHD_FILE: MSMg01no262_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:56 2005CHROMAT_FILE: MSMg01no262_e23.g1 PHD_FILE: MSMg01no262_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGATCC
GCGGAATTCTCAACTGAGGTATACTGAAGGGCTGAGTAGCACTTGAAAAA
TCGATCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAACCTGA
GATCCCACCTCACACCAGTCAGAATGGGTAAGATCAAAAACTCAGGTGAC
AGAAGATGCTGGCGAGGATGTGGAAAAAGAGGAACACTCCTTCATTGCTG
GTGGGATTGCAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAGACTT
CTTTCTAATAGCGTTAGCAGAATTAAGAATCTAGCCATCTCAGGGCACAT
TCTGAACACCTGTGCAATGTTCTATAGGACTGATTCCAAACAAAACAGAG
CTTGCATATATTCATCTTAAGTTTTTTCACATTTGATACAGGCCAAGGAA
AAACTATTGCCTACACAGGCTGGCGTTTGAGTCCATAAGGATTTTAAGAC
TATTTAATACATAATAAGAAAACTTACATGGAAAAATCTAATCATACTTT
AACTAGTTTATCATCTATCGATCTTTGTGATATAGCTGGGAAAAAACAAG
AAAAAAAAAGTACCAAAATACAAAAGCAAGAAATACAACAACAACAAAAC
ATTGTGTTTCTATAATACCAAAGTACTCTAGGACAGATCATACTGGCCAA
TGGATGATGGAGCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
TTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCTAGAAGATGCCCCAACAGGTAAGAAGGACACA
TGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCTACATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATT
AGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACA
TGACACTCAAGGAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTT
AGATTTGGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_e23.b1 MSMg01no262_e23.b1 CHROMAT_FILE:
MSMg01no262_e23.b1 PHD_FILE: MSMg01no262_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:56 2005
         (659 letters)



>mm_chr6_19206515_19207571
          Length = 1057

 Score = 1002 bits (518), Expect = 0.0
 Identities = 546/556 (98%), Gaps = 2/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaattctcaactgaggtatactgaagggctgagtagcacttgaaaaatcgatcaacatcc 74
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 gaattctcaactgagggatactgaagggctgagtagcacttgaaaaatcgatcaacatcc 935

                                                                       
Query: 75  ttaatcatcagggaaatgcaaatcaaaacaaacctgagatcccacctcacaccagtcaga 134
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 934 ttaatcatcagggaaatgcaaatcaaaataaacctgagatcccacctcacaccagtcaga 875

                                                                       
Query: 135 atgggtaagatcaaaaactcaggtgacagaagatgctggcgaggatgtggaaaaagagga 194
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 874 atgggtaagatcaaaaactcaggtgacagcagatgctggcgaggatgtggaaaaagagga 815

                                                                       
Query: 195 acactccttcattgctggtgggattgcaaccactctggaaatcagtctggcggttcctca 254
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 814 acactccttcattgctggtgggatagcaaccactctggaaatcagtctggcggttcctca 755

                                                                       
Query: 255 gagacttctttctaatagcgttagcagaattaagaatctagccatctcagggcacattct 314
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 754 gagacttctttctaatagcgttagcagaattaagaatctagccatctc--ggcacattct 697

                                                                       
Query: 315 gaacacctgtgcaatgttctataggactgattccaaacaaaacagagcttgcatatattc 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaacacctgtgcaatgttctataggactgattccaaacaaaacagagcttgcatatattc 637

                                                                       
Query: 375 atcttaagttttttcacatttgatacaggccaaggaaaaactattgcctacacaggctgg 434
           |||||||| ||| |||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 636 atcttaagctttatcacatttgatacaggccaaggaaaaactatcccctacacaggctgg 577

                                                                       
Query: 435 cgtttgagtccataaggattttaagactatttaatacataataagaaaacttacatggaa 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cgtttgagtccataaggattttaagactatttaatacataataagaaaacttacatggaa 517

                                                                       
Query: 495 aaatctaatcatactttaactagtttatcatctatcgatctttgtgatatagctgggaaa 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaatctaatcatactttaactagtttatcatctatcgatctttgtgatatagctgggaaa 457

                           
Query: 555 aaacaagaaaaaaaaa 570
           ||||||||||||||||
Sbjct: 456 aaacaagaaaaaaaaa 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1057
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1047
Effective search space:   679503
Effective search space used:   679503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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