BAC Information

Click to search

BAC

Clone NameMSMg01-262G12
Chromosome6 (Build37)
Map Location 53,526,005 - 53,526,322
singlet/doubletsinglet
Overlap geneCreb5
Upstream geneHibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262G12.T7 (MSMg01no262_g12.b1)MSMg01-262G12.TJ (MSMg01no262_g12.g1)
ACCAG404514AG404515
length743776
length of high quality
(start - end)
245 (69 - 313)322 (67 - 388)
definitionCHROMAT_FILE: MSMg01no262_g12.b1 PHD_FILE: MSMg01no262_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:03 2005CHROMAT_FILE: MSMg01no262_g12.g1 PHD_FILE: MSMg01no262_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGTTCACACCTAAACATAATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGCAGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACTAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACT
TGAAGTATTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGATCTTAAAAATTCCACCAGAGAACTCCTAAACCTGAT
AAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCATACAAGTCAA
TGGCCTTCCCCCCCACTTAGAATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAACACCGTTCTCAATAGCCACAAATAATATAAAATATCTCGGTGTGAC
TCTAACTAAGGAAGCAAAAGATCTGTATGACAAAAACTTCTAGTCTCCGA
ACAAAGAACTTAAAGAAGATCTCAGAAGACGGAAAGATCTCCCATGTTCA
TGCATTGTCAGGATCATATTTTGTAAAAATGGCTATCTTGCCAAAACCAA
TCTACAGATTCAATGCCACCCCCATTCAAATTTCCATTTCAATTCTTCCA
CGAACTAGAACGAGCAATTCTGCAATTTCTCCGGAATAACAAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCTGCGAAATTCACCCAGGCTAAAGGTTCTGAGGCCGTAGTC
ATAGTGTTAAGCTCGCTGGGCATCAGGGGTGTGCCAGGAACAAAGAATGC
ACACTTGATATTTTTTTCCAGAGTTAGAGTTCATGTTGACTTATCTGTGA
GCTCCTTACCAATAATCAGAAATGCCCTGTGTGTGATCCACAGAGAACTA
GAGAAGGGCCCCTAGCCTGCTGTGCCTTCTGGGATACTAGGTGCCACTTC
TGTCATCATTTGATTTTTGTTTTAGGATGTTTTTGGCAGAGGGGGGCTTA
TTTGGTTGCTGCTTTTTTTTTTTTAAGTTTGCTTAAATAACCACCGATTC
ACATGCACCCCCACACCTCTTGTGATTTCATGACGAATTTTTGATACCAT
TATACCGTTGCCTCGATTCTCCCACCAGTTACATCTTGGCACACGATGTT
CTACAGGCCCAGATTGCTTTCGGACCCCATTTCCTTCTAGTCCTATCCCT
ACTCCTTCCCCTTTTGTCCTGCCTCGTCTCTGACCTCTCGCTTTTTCTCG
TCTTTTCTTCCCCTTTCTTACTTCCCTTGTTCCCCTTTCTTCCTATGCCC
TTTTTCTGCTCTTACTCTACCGCTATATACTCCCCCCCTCCTTTCTTATT
TTCCCCCCTTCCCCCTTTTCTTTTGTTTCTTCCTCCCCATTCTTTCATTC
CCCCCCCTTTCTCCCCTTACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_g12.g1 MSMg01no262_g12.g1 CHROMAT_FILE:
MSMg01no262_g12.g1 PHD_FILE: MSMg01no262_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:03 2005
         (322 letters)



>mm_chr6_53525805_53526525
          Length = 721

 Score =  563 bits (291), Expect = e-165
 Identities = 312/323 (96%), Gaps = 9/323 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcacccaggctaaaggttctgaggccgtagtcatagtgttaagctcgctgggcatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 attcacccaggctaaaggttctgaggccgtagtcatagtgttaagctcggtgggcatcag 260

                                                                       
Query: 61  gggtgtgccaggaacaaagaatgcacacttgatatttttttccagagttagagttcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtgtgccaggaacaaagaatgcacacttgatatttttttccagagttagagttcatgt 320

                                                                       
Query: 121 tgacttatctgtgagctccttaccaataatcagaaatgccctgtgtgtgatccacagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacttatctgtgagctccttaccaataatcagaaatgccctgtgtgtgatccacagaga 380

                                                                       
Query: 181 actagagaagggcccctagcctgctgtgccttctgggatactaggtgccacttctgtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagagaagggcccctagcctgctgtgccttctgggatactaggtgccacttctgtcat 440

                                                                       
Query: 241 catttga----tttttgttttaggatgtttttggcagaggggggcttatttggttgctgc 296
           |||||||    |    ||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 441 catttgagggct----gttttagaatgtttttggcagaggggggcttatttggttgctg- 495

                                  
Query: 297 ttttttttttttaagtttgctta 319
           |||||||||||||||||||||||
Sbjct: 496 ttttttttttttaagtttgctta 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)