BAC Information

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BAC

Clone NameMSMg01-262I14
Chromosome6 (Build37)
Map Location 53,526,009 - 53,526,311
singlet/doubletsinglet
Overlap geneCreb5
Upstream geneHibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262I14.T7 (MSMg01no262_i14.b1)MSMg01-262I14.TJ (MSMg01no262_i14.g1)
ACCAG404611AG404612
length726737
length of high quality
(start - end)
617 (64 - 680)305 (74 - 378)
definitionCHROMAT_FILE: MSMg01no262_i14.b1 PHD_FILE: MSMg01no262_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:12 2005CHROMAT_FILE: MSMg01no262_i14.g1 PHD_FILE: MSMg01no262_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGATCCGCGGAA
TTCAAGGCTCACCCCTAAACATAATAAAAGCAATCTACAGCAAACCAGTA
GCCAACATCAAAGTAAATGCAGAGAAGCTGGAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTAC
TTGAAGTATTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATA
CAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGA
TAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCA
ATGGCCTTTCTCCACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGA
AACAACACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGA
CTCTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTG
AAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC
ATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAA
TCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAAC
GAATTAGAAGGAGCAAATTGCTAATT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCCAGGCTAAAGGTTCTGAGGCCGTA
GTCATAGTGTTAAGCTCGGTGGGCATCAGGGGTGTGCCAGGAACAAAGAA
TGCACACTTGATATTTTTTTCCAGAGTTAGAGTTCATGTTGACTTATCTG
TGAGCTCCTTACCAATAATCAGAAATGCCCTGTGTGTGATCCACAGAGAA
CTAGAGAAGGGCCCCTAGCCTGCTGTGCCTTCTGGGATACTAGGTGCCAC
TTCTGTCATCATTTGAGGGCTGTTTTAGGATGTTTTTGGCAGAGGGGGGC
TTATTTGGTTGCTGTTTTTTTTTTTTTAAGTTTGCTTAGATAACCACCGA
TTCACATGACCCCCACCAATTCATGTGATTTCTTGATTCATTCACGATAC
CATTATAGCGTTGCCCCGATTCTCCTAACTGCCCCCTCTTGTCCAATGAT
TTTCTACCTGTCCATACCTCTTATCGTTTTTTCCATCGCTCTTCCCCCCC
CTTTTTTCCCCCCACTACTCCCCTCTTCCCTCTGTCCTCCTTTTTTTTCC
TTTTTTTCCTCCAATTCCCCCTTTTTCCCCCACCTTTGCCCTCTATTCCT
CTCTTTTTTATCACCCCCCTCTTTTTTTCACCCTCCCTCTTCTTTTTTTT
CCCCACTTTTTTTTCCCACCTTTTCCCACCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_i14.g1 MSMg01no262_i14.g1 CHROMAT_FILE:
MSMg01no262_i14.g1 PHD_FILE: MSMg01no262_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:13 2005
         (305 letters)



>mm_chr6_53525809_53526513
          Length = 705

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccaggctaaaggttctgaggccgtagtcatagtgttaagctcggtgggcatcaggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccaggctaaaggttctgaggccgtagtcatagtgttaagctcggtgggcatcaggggt 260

                                                                       
Query: 61  gtgccaggaacaaagaatgcacacttgatatttttttccagagttagagttcatgttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgccaggaacaaagaatgcacacttgatatttttttccagagttagagttcatgttgac 320

                                                                       
Query: 121 ttatctgtgagctccttaccaataatcagaaatgccctgtgtgtgatccacagagaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatctgtgagctccttaccaataatcagaaatgccctgtgtgtgatccacagagaacta 380

                                                                       
Query: 181 gagaagggcccctagcctgctgtgccttctgggatactaggtgccacttctgtcatcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaagggcccctagcctgctgtgccttctgggatactaggtgccacttctgtcatcatt 440

                                                                       
Query: 241 tgagggctgttttaggatgtttttggcagaggggggcttatttggttgctgttttttttt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagggctgttttagaatgtttttggcagaggggggcttatttggttgctgttttttttt 500

              
Query: 301 ttt 303
           |||
Sbjct: 501 ttt 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)