BAC Information

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BAC

Clone NameMSMg01-262I16
Chromosome6 (Build37)
Map Location 27,183,277 - 27,183,423
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041247, Grm8, 6530409C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262I16.T7 (MSMg01no262_i16.b1)MSMg01-262I16.TJ (MSMg01no262_i16.g1)
ACCAG404615AG404616
length804747
length of high quality
(start - end)
158 (36 - 193)484 (72 - 555)
definitionCHROMAT_FILE: MSMg01no262_i16.b1 PHD_FILE: MSMg01no262_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:13 2005CHROMAT_FILE: MSMg01no262_i16.g1 PHD_FILE: MSMg01no262_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTTACGGGAGAGATCCGCGGAATTCAA
AGCATCATGACTGCTTAGAGGAAATTAGCCTCTCTCGTGGATAATGGTTG
TCCGATGTAGAATGTACAGCTTGAAACCATTAATACACAAATAACAAAAC
AGTAGGAGTCAGCATGGGGTATGTGTGTGAGTGTGTGTGTGTGTTTTATA
CATTTTGTTTAATTTTTACAATTTCATTTTATACCTTTTTTCTCTTTTTT
TCTTGTTCACCGATTCTTTACCTTTTACCTATTTTCTTAACCTTCACCTT
ATTTTTTTTTCCCTTTTACATGCTTTTTTTCCTTTTTTTCTTCTCTCTAA
TTTCTTCCCTTTTCCATCCTGCTCACCTCTTTTTTCCTCTTTTTTTTTTT
CCCCCCCTACTTTTTCTTTTTACTTTTACTTTCTCCGTATCTTTCTCTTT
TCGTTCCATTACTTTATTTCTCATTTATCATTCTTTCCCTTTCTTCCTTT
TCTCTTCCTTTTCCATTATACTTTTTCTCCCCTCCCTCTCTTTTCTCCCA
TTTTTTCTAATTTTACTTCTTTTTTCATCTTTATCCTTATTATTTATCAA
CTCCCTTTCTTCCCCCTCTTTTATTATTCCTTTTTTCCTTATTTTTATTT
TTATTTCCTTCTTCTTTTTTTTTTTCTTTTCTCTTTCTCCTATCTTTTTT
ACCTTTTACCCTCTTCTTGTCTTTTTCCTCTATTATACACATTAAACTCC
CCCCCTTTATTTTCTATATTCTTCACCTTCCATTACTCTATCCATTTAAT
ATTG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCATAAAATTGAACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGTTTCCCCAATTGGTAAGAAAGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAAAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATCAAATACAATGAATTTAT
GAAATTCCTAGGCAAATGTATGGACCTGGAGGGCATCATCCCGAGTGAGG
CAACACATTTCCCAAGGATCTCACCCAATATGCACTCACTGAATAGTGTT
AATTATCCCCAAACCTAGGATACCCACGATATTAAATACCATTTCCCATA
CCACTTTGAGTCTCCGCAAATATGACCACTGTTGCGCGGTACCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_i16.b1 MSMg01no262_i16.b1 CHROMAT_FILE:
MSMg01no262_i16.b1 PHD_FILE: MSMg01no262_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:13 2005
         (158 letters)



>mm_chr6_27183071_27183630
          Length = 560

 Score =  238 bits (123), Expect = 1e-67
 Identities = 141/147 (95%), Gaps = 2/147 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcaaagca-tcatgactgcttagagg-aaattagcctctctcgtggataatggtt 64
           ||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 207 ggaattcaaagcagtaatgactgcttagaggaaaattagcccctctcgtggataatggtt 266

                                                                       
Query: 65  gtccgatgtagaatgtacagcttgaaaccattaatacacaaataacaaaacagtaggagt 124
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 267 gtccgatgtagaatggacagcttgaaaccattaatacacacataacaaaacagtaggagt 326

                                      
Query: 125 cagcatggggtatgtgtgtgagtgtgt 151
           |||||||||||||||||||||||||||
Sbjct: 327 cagcatggggtatgtgtgtgagtgtgt 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 560
Length adjustment: 8
Effective length of query: 150
Effective length of database: 552
Effective search space:    82800
Effective search space used:    82800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)