Query= MSMg01no262_i22.b1 MSMg01no262_i22.b1 CHROMAT_FILE:
MSMg01no262_i22.b1 PHD_FILE: MSMg01no262_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:14 2005
(487 letters)
>mm_chr6_114805649_114806532
Length = 884
Score = 789 bits (408), Expect = 0.0
Identities = 452/472 (95%), Gaps = 11/472 (2%)
Strand = Plus / Plus
Query: 20 tccctgtccctcccagaagagaggtagggagcaggatgtgcagaggcccgcagagtcttt 79
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct: 220 tccctgtccctcccagaagagaggtggggagcaggatgtgcagaggcccacagaggc--- 276
Query: 80 ----atagtcaggcatgaggagtgccagccccaactctcacaagctgcaatgtggcttaa 135
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 277 ccgcagagtcaggcatgaggagtgccagccccaactttcacaagctgcaatgtggcttaa 336
Query: 136 gatgtttacattagcaaatgaacacttttaacacaccccaaaatataattgtgttattcc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gatgtttacattagcaaatgaacacttttaacacaccccaaaatataattgtgttattcc 396
Query: 196 cgggtgatgacagtgtgtatggaagaggccccttggcccatggtgtgcactgcagtgtcg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cgggtgatgacagtgtgtatggaagaggccccttggcccatggtgtgcactgcagtgtcg 456
Query: 256 tccaaagcagacccaggctgaaaccggctgctggtatcttctttccagagccttcacacc 315
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 457 tccaaagcagacccaggctgaaactggctgctggcatcttctttccagagccttcacacc 516
Query: 316 agtgctgcagaccggtacaccttaatggctgtggggctgtggagtcaggcagacttcctc 375
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agtgctgcagaccagtacaccttaatggctgtggggctgtggagtcaggcagacttcctc 576
Query: 376 tggcacctcccataaggcctggttagaagggcctttctctcatctcagagtcgtggcacg 435
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tggcacctcccgtaaggc----ttagaagggcctttctctcatctcagagtcgtggcacg 632
Query: 436 gcttgctgtctttccttgagagctgtggttcctgccctgccctccttcagtg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gcttgctgtctttccttgagagctgtggttcctgccctgccctccttcagtg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 884
Length adjustment: 10
Effective length of query: 477
Effective length of database: 874
Effective search space: 416898
Effective search space used: 416898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_i22.g1 MSMg01no262_i22.g1 CHROMAT_FILE:
MSMg01no262_i22.g1 PHD_FILE: MSMg01no262_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:14 2005
(548 letters)
>mm_chr6_114926993_114927940
Length = 948
Score = 880 bits (455), Expect = 0.0
Identities = 470/475 (98%)
Strand = Plus / Minus
Query: 74 actgcaaaagtagagaaagggagcagcagcgttcaccccatccttctcttctccttggct 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 actgcaaaagtagagaaagggagcagcagcgttcaccccatccttctcttctccttggct 889
Query: 134 gtggatgagccagaaccagatgcttccagttgtgttgacttccccacaatgaacggattg 193
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 888 gtggatgagccaggaccagatgcttccagttgtgttgacttctccacaatgaacggattg 829
Query: 194 cagcctggaaccatgagctgggataaactgtttctcttaagttgtttagtcagagtgatt 253
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 828 cagcctggaaccatgagctggaataaactgtttctcttaagttgtttagtcagagtgatt 769
Query: 254 tattacagcaaaataactaagttacttaagtaacagagtaacttagttactcagggcctt 313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 768 tattacagcaaaataactaagttacttaagtaacagagtaacttagttactcagggtctt 709
Query: 314 tataaaagagcttgagagttatgagttcagctctcctgccctcctgcctgacaccaggtg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tataaaagagcttgagagttatgagttcagctctcctgccctcctgcctgacaccaggtg 649
Query: 374 aacacaaagccaacaggcatcaccttgaaagcagaaaacaggccctaccctattggccta 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aacacaaagccaacaggcatcaccttgaaagcagaaaacaggccctaccctattggccta 589
Query: 434 ctaaggccaatgagccttgacattggactccccaggttcttgtgaattgtgtcagtgttc 493
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccaaggccaatgagccttgacattggactccccaggttcttgtgaattgtgtcagtgttc 529
Query: 494 aagtcttagttgttagagagtggtaccccgtgggcactgggggagggtttatgga 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aagtcttagttgttagagagtggtaccccgtgggcactgggggagggtttatgga 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
