Query= MSMg01no262_m23.b1 MSMg01no262_m23.b1 CHROMAT_FILE:
MSMg01no262_m23.b1 PHD_FILE: MSMg01no262_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:32 2005
(620 letters)
>mm_chr6_22118226_22119247
Length = 1022
Score = 1152 bits (596), Expect = 0.0
Identities = 612/618 (99%), Gaps = 3/618 (0%)
Strand = Plus / Plus
Query: 6 ggaattcataaccaagaggacaagcagagggtcacacagagatgtcctttatctagatga 65
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcataaccaagaggaaaagcagagggtcacacagagatgtcctttatctagatga 264
Query: 66 ttctatcaccacaatcacacagctgtatggaaatcagtagcagaggagacctctctccct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctatcaccacaatcacacagctgtatggaaatcagtagcagaggagacctctctccct 324
Query: 126 tacttccacagcctctgaggaggcagaggaggggcagctggagccagcacgtggcgggtg 185
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 325 tacttccacagcctctgaggaggcaggggaggggcagctggagccagcacgtggtgggtg 384
Query: 186 agcacagaagcagctgggtggagcgaagaaaagatggtacccaaggcaaccccaacaagc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcacagaagcagctgggtggagcgaagaaaagatggtacccaaggcaaccccaacaagc 444
Query: 246 atcctagcccccctcactcaggacaaatgcatccaaacacatctaaaagtttcatccagg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcctagcccccctcactcaggacaaatgcatccaaacacatctaaaagtttcatccagg 504
Query: 306 aaaactagaaatttaatcagaagctaatttttttttcaaaaaaaaaaaaaa-gaaaatta 364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 aaaactagaaatttaatcagaagctaatttttttttcaaaaaaaaaaaaaaagaaaatta 564
Query: 365 tattcttgtacataaagcctctgaccatctgtgaagctcgcagcaattatgctagtactg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattcttgtacataaagcctctgaccatctgtgaagctcgcagcaattatgctagtactg 624
Query: 425 acttgagcttctctgggttatggaaagaaccattaac--ggggtgataatatggcagcag 482
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 acttgagcttctctgggttatggaaagaaccattaacttggggtgataatatggcagcag 684
Query: 483 agagacactgctgggtcaaaaagattcccaagtgaattctggaaggcctctgaagagaca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agagacactgctgggtcaaaaagattcccaagtgaattctggaaggcctctgaagagaca 744
Query: 543 gttgtggagatggaaggacagggttgtaccaggtgtttcagcctgcatcaaaatagcaag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttgtggagatggaaggacagggttgtaccaggtgtttcagcctgcatcaaaatagcaag 804
Query: 603 gtatagaagcatgctgat 620
||||||||||||||||||
Sbjct: 805 gtatagaagcatgctgat 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space: 617320
Effective search space used: 617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_m23.g1 MSMg01no262_m23.g1 CHROMAT_FILE:
MSMg01no262_m23.g1 PHD_FILE: MSMg01no262_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:32 2005
(673 letters)
>mm_chr6_22196342_22197421
Length = 1080
Score = 1151 bits (595), Expect = 0.0
Identities = 633/649 (97%), Gaps = 7/649 (1%)
Strand = Plus / Minus
Query: 1 tagtgaaagagaaaagaaatagttgtatacctctcaccatttcttccacatctggtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tagtgaaagagaaaagaaatagttgtatacctctcaccatttcttccacatctggtctct 590
Query: 61 ggaccatttccagagctaatgtcagtggtgtgctgtggcagagttcacagtgtctgcgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggaccatttccagagctaatgtcagtggtgtgctgtggcagagttcacagtgtctgcgtc 530
Query: 121 atagcagcccagggatgatttgccgcttgcaatgg---gaagtggttactgattgcaatg 177
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 529 atagcagcccagggatgatttgccgcttgcaatgggaagaagtggttactgattgcaatg 470
Query: 178 gctctactttggatctgatttgttgactcttcattcagagtaagacagccagtggttaag 237
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 469 gctctactttggatctgatttgttgactcttcatttagagtaagacagccagtggttaag 410
Query: 238 aaataaggatgttttc----tttttctcacttagcagatgtgaagggctttctaagaggt 293
|||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 409 aaataaggatgttttctttttttttttcacttagcagatgtgaagggctttttaagaggt 350
Query: 294 accatctctgaaaaattgatcaaaccctttaactcatatctgacaataaatacacagatg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 349 accatctctgaaaaattgatcaaaccctttaactcatatctgacaataaatacacaggtg 290
Query: 354 aacttatgaaataaaaagaaaaacgttttcatgttcaaaagagtttgaaaaacctaatgt 413
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 289 aacttacgaaataaaaagaaaaacattttcatgttcaaaagagtttgaaaaacctaatgt 230
Query: 414 agacattaatatcaaactaatctagatgttaactaactaactaattaactaattatttat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 229 agacattaatatcaaactaatctagatgttaactaactaactaattaactaattacttat 170
Query: 474 tagttggggaaatagcatcgtactttctgttatcttgctctgttgctcaagctagtttca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tagttggggaaatagcatcgtactttctgttatcttgctctgttgctcaagctagtttca 110
Query: 534 agttcctgcacttagtcatcctcctgcctcagccttcagagtgctaggacgaatggcatg 593
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agtttctgcactcagtcatcctcctgcctcagccttcagagtgctaggacgaatggcatg 50
Query: 594 catcatcatattcagttcaatgttcaactttatttattgttagggtttt 642
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 catcatcatattcagttcaatgttcaactttatttattgttagggtttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1080
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1070
Effective search space: 709410
Effective search space used: 709410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
