BAC Information

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BAC

Clone NameMSMg01-263B19
Chromosome6 (Build37)
Map Location 83,205,874 - 83,362,612
singlet/doubletdoublet
Overlap geneC330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik
Upstream geneTacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1
Downstream geneDguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263B19.T7 (MSMg01no263_b19.b1)MSMg01-263B19.TJ (MSMg01no263_b19.g1)
ACCAG405023AG405024
length770732
length of high quality
(start - end)		216 (109 - 324)464 (77 - 540)
definitionCHROMAT_FILE: MSMg01no263_b19.b1 PHD_FILE: MSMg01no263_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:56 2005CHROMAT_FILE: MSMg01no263_b19.g1 PHD_FILE: MSMg01no263_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,205,874 - 83,206,089)(83,362,149 - 83,362,612)
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCTGGATGTGGTGATGCATCCCTATGATCCCAGTACCTGGG
AGGTGAAGGAAAGGGTTGTGAGTTTGACACTAGCTACAGAGATGGCTCAA
CAGGTAAAGGTGCTTGCTGCCAGGCCTAGTGACTACGTTTGATTCCTGGA
ACCCACATGGTGGAAGGAAAGGAAACAACCCTGCAGCTCATGGTTGGTAG
CTATGCTCCCACCTGTGAACAATCTCACTGGCCCAGCTGAAGCTTTTCCA
GGCTGCGGCTTACTGTCCGCTAAGGTGATGTCCACCCCCAGTCCTCTTCC
TTTTTAGACTATTCCTTTTTGATTCCCATCACCCCTCGCCCCTCAGGGGG
ACTTTAATAGCAGGTGGCCCCGAACACCTCCCTTCAAATTCCAGATGGTG
CAGGTAGAAGCTGCCCACTGTTTCAGGCATGATCTGCCTCTATGGTGGAC
TGGAGTCCGCTGCTGGGACGCTTACCTTCCCTGGGGACTCTGTCATGCTG
ACTTGGAGCTGATTCAGAATGCGATGTCTGTTTCTCCAGATGCCTCTGCT
CGTCTGTTCTACGCCCTCCTTACTCCCATCTCGTCATTCCTGCCTGTGCT
TCTATTGCTCCCTCCCCCCTATTTACTCCCCCTATATTACTCTATTCTCT
CTCCCTTTTACTCCCCTCTTCCACCCCCCCTGCTCTTCCCCGCCCCCCTG
ATCTTCTCTACTTTTTCCAC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCCATAGAGTCCACCGCGGAGA
GATGGGCATCTGTAGAGGTTGATGGGGCTTGCTCATTCTGGCAGCCGGCA
TCTTGGCAGGTTTCTGCTAATGTGGTGTGTAGCTGACAAGCAGCAGGCCA
GCCCTGTAGCTTGTTCCTCTTGTAAGTCAGCCTTCAGCCAAGGCTGAGAA
AGGATGAACAGTAGCGCTTCGCTCCCCTCGTACCGCTCGCTCTTCTGAAG
CAAGTCCCTTTGCTTCCCATTCGGTACAGTATTGCAGAGCTGGTGTGTAC
TTGATTGCTAACCTGGAAAAACTTAGGAAGCTGGGATTGCGTCCGAAGCT
GTCTCTGGTGGTGGCGACTCACTTATCTGGAGAATCCACCTGTTCCCAGC
CTTGCCTCAAAACCAGGGCTTCTGGACTCCCTTCGTTAGGGTGGCGGGCT
GCTGCTGTTGAACCCCTGTAGCTGTCTGGAAGACGGTGGCAGAGATTATA
GAGCCCCAGAAGGGAGTTCACTGTAGAGGGTGAGGCAGTGTGGCAGGATG
CAAAATGACTTCCCAACAGAGGCTCCTGTGTCTCTGGTGGTACATAGGAG
TGGCACAAAGGGGAACTCTGAGCTTCCGGCTCTCTCAGCTCCTCATAATG
AAACAAAACTCAAGATCTTTCTGCATCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_b19.b1 MSMg01no263_b19.b1 CHROMAT_FILE:
MSMg01no263_b19.b1 PHD_FILE: MSMg01no263_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:56 2005
         (216 letters)



>mm_chr6_83205674_83206289
          Length = 616

 Score =  395 bits (204), Expect = e-114
 Identities = 213/216 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagggttgtgagtttgacactagctacagagatggctcaacaggtaaaggtgcttgct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gaaagggttgtgagtttgacactagctacagagatggctcagcaggtaaaggtgcttgct 260

                                                                       
Query: 61  gccaggcctagtgactacgtttgattcctggaacccacatggtggaaggaaaggaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gccaggcctagtgactacgtttgattcctggaacccacatggtggaaggaaagaaaacaa 320

                                                                       
Query: 121 ccctgcagctcatggttggtagctatgctcccacctgtgaacaatctcactggcccagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgcagctcatggttggtagctatgctcccacctgtgaacaatctcactggcccagct 380

                                               
Query: 181 gaagcttttccaggctgcggcttactgtccgctaag 216
           |||||||||||||||||||||||| |||||||||||
Sbjct: 381 gaagcttttccaggctgcggcttaatgtccgctaag 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no263_b19.g1 MSMg01no263_b19.g1 CHROMAT_FILE:
MSMg01no263_b19.g1 PHD_FILE: MSMg01no263_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:56 2005
         (464 letters)



>mm_chr6_83361949_83362812
          Length = 864

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accccatagagtccaccgcggagagatgggcatctgtagaggttgatggggcttgctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 accccatagagtccaccgcggagagatgggcatctgtagaggttgatggggcttgctcat 605

                                                                       
Query: 61  tctggcagccggcatcttggcaggtttctgctaatgtggtgtgtagctgacaagcagcag 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tctggctgccggcatcttggcaggtttctgctaatgtggtgtgtagctgacaagcagcag 545

                                                                       
Query: 121 gccagccctgtagcttgttcctcttgtaagtcagccttcagccaaggctgagaaaggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gccagccctgtagcttgttcctcttgtaagtcagccttcagccaaggctgagaaaggatg 485

                                                                       
Query: 181 aacagtagcgcttcgctcccctcgtaccgctcgctcttctgaagcaagtccctttgcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aacagtagcgcttcgctcccctcgtaccgctcgctcttctgaagcaagtccctttgcttc 425

                                                                       
Query: 241 ccattcggtacagtattgcagagctggtgtgtacttgattgctaacctggaaaaacttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccattcggtacagtattgcagagctggtgtgtacttgattgctaacctggaaaaacttag 365

                                                                       
Query: 301 gaagctgggattgcgtccgaagctgtctctggtggtggcgactcacttatctggagaatc 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 364 gaagctgggattgcgtccgaagctgtctctggtggtggtgactcacttatctggagaatc 305

                                                                       
Query: 361 cacctgttcccagccttgcctcaaaaccagggcttctggactcccttcgttagggtggcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cacctgttcccagccttgcctcaaaaccagggcttctggactcccttcgttagggtggcg 245

                                                       
Query: 421 ggctgctgctgttgaacccctgtagctgtctggaagacggtggc 464
           ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 244 ggctgctgctgttgaacccctgtagctgtctgggagacagtggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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