BAC Information

Click to search

BAC

Clone NameMSMg01-263C20
Chromosome6 (Build37)
Map Location 5,467,077 - 5,467,368
singlet/doubletsinglet
Overlap genenone
Upstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
Downstream geneDync1i1, Slc25a13, EG667462, EG667468, LOC667471, LOC100040096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263C20.T7 (MSMg01no263_c20.b1)MSMg01-263C20.TJ (MSMg01no263_c20.g1)
ACCAG405071AG405072
length751758
length of high quality
(start - end)
573 (70 - 642)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no263_c20.b1 PHD_FILE: MSMg01no263_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:01 2005CHROMAT_FILE: MSMg01no263_c20.g1 PHD_FILE: MSMg01no263_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGGAAGCTTCTCATTTCTCTTTTTAATTTCTGTCTTGTAGTCCAATC
TATTTGGTATTCTGTGTGATTATCTGAACCTTTTTGTTAGGGCTGCAGAA
ATTTCCTTCTATCATTTTGTTAAACATATATTTTTGTATTTTTAGACACA
GTTTCATCTCTTTATTCCAAACATTCTTAGATTTTGGTCTATTCATATTT
TCTCAGATTTCCCAGATATATTGTGCCTTTTTTAGCCAACAGTTTCTTTG
ACAGAGATCTTTATTTCTTTTACTGTGCACTGTCTACTGTGCACCGTCTA
CTGTGTACCGTCTACTGTGCACCGTCTACTGTGCACCGTCTACTGTGCAC
CGTCTACTGTGCACCGCCCACTGTGCACCGTCTACTGTGTACCGTCTACT
GTGTACTGTCACTGTGTACTGTCTACTGTGCACTGTCTACTGTGCACTGT
CTACTGTGCACTGTCTACTGTCTACTGTGTACTGTCTACTGTGCACTGTC
TACTGTCTACTGTGCGCTGTCTACTGTGCACTGTCTACTATGCACTGTCT
ACTGAGTACTGTCTACTGTGCACTTTCTACTGTGCACTGTCTACTGTGTA
CTGACTACTGTGCACTGTCTACCGTGTACTGTCTACTGTGCACTGTCTAC
TGTGCACTGTCTACTGTGTACCGTCTACTGTGCACTGTCTACTGTGTACC
G
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCTATTACCTACTAGGACCT
TTAATTTATTCTTACCCAGTCAATCGACAACAATTTAAGCAAAGCAGGCT
CTGTTTTCCTCTAAGTTGCAACTGAGCTGAGAGCTGTCACGAACCAATTT
TCACCTAGTGTGAACTACAGCATCTGAATGATAAACACCAGTAAATGATA
TCCTTTCTAGAATGCCAGCAGGTTTGCTTTAACCAAGCTTATGCTACCAG
GCAACAATCTACGAAAACCAATATTCTGTTGTTAATTACCCATCTAAAAG
GCTAGAGAGGAAATTACTGATTTAAAAAAAACGCACTCTTCACAATAATT
CCTCCATTAGCCCTCTCCTGAACCCTCCCTTACTCAAGAAAGGTGAGCAC
CTGAAGTGTCAGAGAATACTAATTTTCATTCAAATGGAGTAAGAGAGGGT
TGTCCTCCTTTTAAAGGAAAGGACTTTGCAATTCCATGCAAAGTCTTTCC
TTACCCCACAGAGTAACTTAATAGATATGGAGTACAGTGGTGGGCGAAAG
TTACAGGGAAGGCTTCCAGTGTGATACATTATGAATCAGAAATCCCAAAC
TGATGCCATTATAGCCAGTCTCACAGCATCTTGGACCTTATTGTTTCATT
CATTCAGTCAGTCAGCTAGTCAGTTTGCCTTCCGGTCTGCCAGTTTTCCT
TCTGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_c20.g1 MSMg01no263_c20.g1 CHROMAT_FILE:
MSMg01no263_c20.g1 PHD_FILE: MSMg01no263_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:01 2005
         (292 letters)



>mm_chr6_5466877_5467568
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagctattacctactaggacctttaatttattcttacccagtcaatcgacaacaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 492 agaagctattacctactaggacctttaatttattcttacccagtcaatcgaaaacaattt 433

                                                                       
Query: 61  aagcaaagcaggctctgttttcctctaagttgcaactgagctgagagctgtcacgaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagcaaagcaggctctgttttcctctaagttgcaactgagctgagagctgtcacgaacca 373

                                                                       
Query: 121 attttcacctagtgtgaactacagcatctgaatgataaacaccagtaaatgatatccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 372 attttcacctagtgtgaactacagcatctgaatgataaacaccagtaaatgatatccttc 313

                                                                       
Query: 181 ctagaatgccagcaggtttgctttaaccaagcttatgctaccaggcaacaatctacgaaa 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 312 ctagaatgccagcaggtttgctttaaccaagcttacgctaccaggcaacaatctacgaaa 253

                                                               
Query: 241 accaatattctgttgttaattacccatctaaaaggctagagaggaaattact 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 accaatattctgttgttaattacccatctaaaaggctagagaggaaattact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)