Query= MSMg01no263_d02.b1 MSMg01no263_d02.b1 CHROMAT_FILE:
MSMg01no263_d02.b1 PHD_FILE: MSMg01no263_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:02 2005
(590 letters)
>mm_chr6_94375595_94376584
Length = 990
Score = 932 bits (482), Expect = 0.0
Identities = 556/588 (94%), Gaps = 18/588 (3%)
Strand = Plus / Plus
Query: 5 gaattccagtgatgttctccccggacattaaaaaaaaaaaattagccttacgattctttt 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaattccagtgatgttcttcccggacattaaaaaaaaaaaattagccttacgattctttt 278
Query: 65 tgaagtgcagcc-tgagaaacaaggcgacaatgcctgatttaaaggtatacttcagagcc 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgaagtgcagccctgagaaacaaggcgacaatgcctgatttaaaggtatacttcagagcc 338
Query: 124 atagtaacggaagcagcatgtcactgtcacaataactgatcagaggaacacaacagaaga 183
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atagtaacagaagcagcatgacactgtcacaataactgatcagaggaacacaacagaaga 398
Query: 184 cctacatacaaaccttcacaggtacggcgacctgatctctgacaaagccaccaaaagtac 243
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 399 cctacatacaaaccttcacaggtaccgcaacctgatctctgacgaagccaccaaaagtac 458
Query: 244 acattggcaaaatgaaagcctctttaacaaatgatgtttggaaagctggatattcaaatt 303
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 459 acattggcaaaatgaaagcctctttaacaaatgatgtttggaaaactggatattcagatt 518
Query: 304 gtcccttagttctctctctctccttctctcccccaactctctctctctccctctcctctc 363
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 519 gtcccttagttctctctctctccttctctcccccagctctctctctctc-------tctc 571
Query: 364 tctctctctctctctctctctctctctctcacatcaactctgaatgaatcaaacacctta 423
||||||||||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct: 572 tctctctctctctctctct-t-----tctca--ttaactctgaatgaatcaaacacctta 623
Query: 424 actcaagatctgaaatggttagagtaaaaggtaggaaaaccacttcaagataggggcaca 483
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 624 actcaagatctgaaacggttagagtaaaaggtaggaaaaccattttaagataggggcaca 683
Query: 484 ggtaa-ggattttctgaatagggttctagtcatccaggaagcaaggtgttttaatctcct 542
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 ggtaaagg-ttttctgaatagggttctagtcatccaggaagcaaggtgttttaatctcgt 742
Query: 543 ttgtggtgtttgaatatgcttagcccatgggaagtgacattattagga 590
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttgtggtgtttgaatatgcttagcccatgggaagtgacattattagga 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_d02.g1 MSMg01no263_d02.g1 CHROMAT_FILE:
MSMg01no263_d02.g1 PHD_FILE: MSMg01no263_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:02 2005
(284 letters)
>mm_chr6_94482853_94483536
Length = 684
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Minus
Query: 1 tcttctcttagggtgttacagcaacaaaacaggcactctcagatggtctttagtgaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttctcttagggtgttacagcaacaaaacaggcactctcagatggtctttagtgaaata 362
Query: 61 accggtggactttattccttacgaataggaccttggtgaaataactcgtgtactttattc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 accggtgtactttattccttacgaataggaccttggtgaaataactcgtgtactttattc 302
Query: 121 cttacggataggaccttataaacattttggagtggggtgggatctaaaggcagatgcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttacggataggaccttataaacattttggagtggggtgggatctaaaggcagatgcttt 242
Query: 181 ctattggtttggtctgagatgttaaggatgtctcatctcaatgtggaggggcttcaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctattggtttggtctgagatgttaaggatgtctcatctcaatgtggaggggcttcaggtg 182
Query: 241 ttgcccctatgtgactggttgtcatagtccattccatggagtac 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgcccctatgtgactggttgtcatagtccattccatggagtac 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
