BAC Information

Click to search

BAC

Clone NameMSMg01-264D22
Chromosome6 (Build37)
Map Location 107,446,930 - 107,447,164
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264D22.T7 (MSMg01no264_d22.b1)MSMg01-264D22.TJ (MSMg01no264_d22.g1)
ACCAG405845AG405846
length724827
length of high quality
(start - end)
318 (45 - 362)235 (77 - 311)
definitionCHROMAT_FILE: MSMg01no264_d22.b1 PHD_FILE: MSMg01no264_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:22 2005CHROMAT_FILE: MSMg01no264_d22.g1 PHD_FILE: MSMg01no264_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGCTCGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAAATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATTTTTTTTAGTGCCTNTGCCTCCACGTGAAGTTCCTTGATC
TACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATTGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGG
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTTTCTGTTTCTATACCAGTAACATGCAGGTTTTTATCACAATTGCT
CTATAGTAAAGCTTTAGGTCAGGCATGGTGATTCCCCCAAAGGTTCTTTT
ATCCTTGAGAAGAGTTTTTGGCTT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAAGTTAAGCCCAGCGATGCCTG
AATTTTGTTGTCTGTTGTATTGTTTCCATATTTAATTAATGGCACTTCAG
TGATAAATAAATTTTAAATGATAAAACTACCAATTAGAGCCAAGGGATGT
GATAATTTTTTTAAGGTCCACAAAGATTACTTAAAATTCTAAGACTTTAA
AAAATACGGTCAGAGGACAGATTGGTGGGGAGGGAGGGGGTGAGGTAATA
AAATATGGAATGCAANCACACATTTTTTTTTTTTAAAAGTAATCTTAAAA
TATATAGAAAATATTTAGGTAGTTCCCCGAAACAGATCCCCTATTGTTTT
TTTTTTGTTTTTTATATATTGGTAATTCTAAAAAAAAAAAAAAAAAAAAC
TGGGTGGGGGGGGGGGGCGTGTCTTTTTTCAATATTTTTTATATTTTTAT
CCATACTTCTATTTCTAATATAAATTTTCAAATTATATAATAAATAATTT
AAAATATTATAATCTTTAATTTTTACACATTTTAAGTTTCTGCTTTCTTT
TTTTNATTTTTGTTTTTTGTAATTTGTTTGGTATTGTATTTATTTTTTGA
CATTATTTTTATATTAAATTATAACTTAATATACATAGCCTCTTAACTCT
AAGAAGTCTTTTTTTATTTATTATTCTTGTTTTCATTCCTTTAATAGCTT
AATTAGTTATCAATATTTTTTATCTTCTATTTATGTACTTATAATATATA
TAGAAGGGAACCTTAACTTTTATTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_d22.g1 MSMg01no264_d22.g1 CHROMAT_FILE:
MSMg01no264_d22.g1 PHD_FILE: MSMg01no264_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:22 2005
         (235 letters)



>mm_chr6_107446730_107447364
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaagttaagcccagcgatgcctgaattttgttgtctgttgtattgtttccatatttaat 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaagttaagcccagcaatgcctgaattttgttgtctgttgtattgtttccatatttaat 260

                                                                       
Query: 61  taatggcacttcagtgataaataaattttaaatgataaaactaccaattagagccaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatggcacttcagtgataaataaattttaaatgataaaactaccaattagagccaaggg 320

                                                                       
Query: 121 atgtgataatttttttaaggtccacaaagattacttaaaattctaagactttaaaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtgataatttttttaaggtccacaaagattacttaaaattctaagactttaaaaaata 380

                                                                  
Query: 181 cggtcagaggacagattggtggggagggagggggtgaggtaataaaatatggaat 235
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcagaggacagattggtggggagggagggggtgaggtaataaaatatggaat 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)