BAC Information

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BAC

Clone NameMSMg01-264L04
Chromosome6 (Build37)
Map Location 100,306,353 - 100,306,664
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
Downstream geneShq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264L04.T7 (MSMg01no264_l04.b1)MSMg01-264L04.TJ (MSMg01no264_l04.g1)
ACCAG406173AG406174
length7361,040
length of high quality
(start - end)
316 (46 - 361)76 (125 - 200)
definitionCHROMAT_FILE: MSMg01no264_l04.b1 PHD_FILE: MSMg01no264_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:57 2005CHROMAT_FILE: MSMg01no264_l04.g1 PHD_FILE: MSMg01no264_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCAACTAAGGTTCCATATAACTGGAACCTGTGACTGTTAGCT
AACTCTCCCATGTTAAAGGTGGGATTTTGCTTTTATTTTGGGAGGGGTGG
TAAAGTGATTAAATACAGAATCCAGACTGCAAGAGGAATATTTCAGTAGT
TACAGCTTAGGGGCTTTTGTCATAACACTCCATTAGGGTCCAATGGAATC
TGCTACATAGAAGTAATTGGTTCTTACCCCCCCCCCCTTAATTTGAAAAG
GGCCAAGATGAAGACCAATATTCTATTACAGAAACTTCAACTTCTGATCC
TCCTGACTTCATTTTTTTTGAGCTTGGCGTTTACCCATGTACCACCTCAC
TGTAGCTTTCTGCAGTGCCGAGGTGGAGCACAGGCCCTCGTGCGTGCTAG
GTAGGCACTCTACCTGAGCCACATCCCCAGCCCTGCTCCTCTTTAAACAA
AGCTGAACCACGTGGACTTTGTCCTCAGCAAACAACCTTTACCTAGGATT
AGGCTCAGGAATGATCAGAGAGCTCCTAGGGTCAGTACAGAGGAAAGGGC
TGCCAAGCTAATTGCCAAGGCTGACCTGTAAACCGGAAAGTCCTCCAAAT
GAAAGATGCAAGCCAGACAAGGTCACAGAAGCAGAACCGTAAGTCCCATG
GATCCTTAAATCTAAATTTAAACCTTCGGGAATGCA
ACCGCCCCCCCCACCCATCGGGCCCCACTTTTGTCCNCCCNNNNCCCTCA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTCTTCAGCGCTCGGGTCTTGAGGG
CAGGCTGCTTTGAAATGCCCACACCCGCAAGTTGTGGTCCAGAGCACCGC
ATGACAAGGTCAGGTTGCAAACGGTTGTGAAGTTAATTAAGTGTTGCTAA
CAGAAAGGGCTCGGAAAATATAAAGCTCTCTTGGGGAAATTTTTATTATA
ACTGAAGTTGATTTATTTAACTATTTGTTTGTTTGTTCATTATGTGTCGT
GGGCGGAGGTGAGAGATAACTTGCCACGGTCTATTTTTCTTCTCCTTTCC
CCCATGTTATGAGACCTGTTATACTAGAAATTTTTTGGTAGTTTTACCCC
CAAACAAACCCCACCCTTTTTTCTAAATATAAGCCTATTCTTGTCCGTTC
ACACGCTTTTTTCTATAACAATAAAAAAAAGAAAAAATACTTCGGGTCTG
CAGATACACTCTTCCTACTTATATATCCTTCTATACCTTACAAATCTAAC
CCTCGTGTTACACTCACCTTCAATACCTAATCTTTATCCACTCACCGAGC
AGTTGGATCTCAGATTTCTTTTTCATAATTTATTTCTACTCATAGAACAA
GTACATACTTACTCCCTTTATCAACTACATCAAATTACCTTCTATGAGTG
TGTGCACCTACGACTCAACAAATATACACAAATGGGTACCATCCAAAATG
GTGTTCACTATAACTACACCTCGGTCCGTCCAATCACTAGTTAATGGCTT
GTATTTTTAACAATCACAAAACACAAAACCTATAATAATAATAATATACG
CACTCAAACACTGATAAATTCTACTAAACCATCCTACTCCGTTNTTGCTC
CCTCTCCTAAACATAGCTGACATAAATCTCAATTATTCCCGAGATCAGTC
CGTCACATATAAATCCTCCGCAAACAATATTACAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_l04.b1 MSMg01no264_l04.b1 CHROMAT_FILE:
MSMg01no264_l04.b1 PHD_FILE: MSMg01no264_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:57 2005
         (316 letters)



>mm_chr6_100306149_100306864
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccaactaaggttccatataactggaacctgtgactgttagctaactctccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccaactaaggttccatataactggaacctgtgactgttagctaactctccc 264

                                                                       
Query: 65  atgttaaaggtgggattttgcttttattttgggaggggtggtaaagtgattaaatacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttaaaggtgggattttgcttttattttgggaggggtggtaaagtgattaaatacaga 324

                                                                       
Query: 125 atccagactgcaagaggaatatttcagtagttacagcttaggggcttttgtcataacact 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 atccagactgcaagaggaatatttcagtagttacagcttaggggcctttgtcataacact 384

                                                                       
Query: 185 ccattagggtccaatggaatctgctacatagaagtaattggttcttaccccccccccctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccattagggtccaatggaatctgctacatagaagtaattggttcttaccccccccccctt 444

                                                                       
Query: 245 aatttgaaaagggccaagatgaagaccaatattctattacagaaacttcaacttctgatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatttgaaaagggccaagatgaagaccaatattctattacagaaacttcaacttctgatc 504

                       
Query: 305 ctcctgacttca 316
           ||||||||||||
Sbjct: 505 ctcctgacttca 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)