BAC Information

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BAC

Clone NameMSMg01-264M18
Chromosome6 (Build37)
Map Location 76,590,698 - 76,746,494
singlet/doubletdoublet
Overlap geneLOC100042956
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneCtnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264M18.T7 (MSMg01no264_m18.b1)MSMg01-264M18.TJ (MSMg01no264_m18.g1)
ACCAG406243AG406244
length740763
length of high quality
(start - end)		355 (386 - 740)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no264_m18.b1 PHD_FILE: MSMg01no264_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:05 2005CHROMAT_FILE: MSMg01no264_m18.g1 PHD_FILE: MSMg01no264_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,590,698 - 76,591,050)(76,746,207 - 76,746,494)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATCATGCACTCACGAGACAGAGGAAACATTTTATTGGAATGTAG
GCTGGACAGCTGAGCTAATGCTTTGAAAGGGTCTAGCAGCTCTCCAAGTT
CTTACAGATTTTACAGGTCAGGTAACAAGTGGTCTTTGAGTTTTCTGCCC
ATTGAAAGAAATTTCCTTCAACGTTAGGCATGTTTACAGGAATTGAAATT
GCAGGAACAAACATTTTCTTTGCAGGTCGCAATAAAATATACAAACACTT
GGCAAGTGGCAATAAAAACTATAATTTCTTTCTAAAGGAACAGGACCCAT
TTATGGTCTCTGTTCTATTAGCTCCGAGCATNACTTCTTCAGGTGGTTTC
TGCTAAATGTTTGTCTTTTCAAGATAAGAACTATAATCTTCATCAACCAG
CCGAGATCAGCACATGCTTGGTGCAATTTTAACTCACTCTACATCTATAC
AAACTTATGTTTCTGAGCTACGCTACTGTAACATAGAGTAGTGAGATTCT
TATGTGTATATACAGGAGCACAGCATTATATTAGTATCACTTTCTCACCA
CAGTTAGAGATACAGGATGACAGCACATGTTCAGAGAGACACTTTTGACT
CTGTTTTAGTAATCCCGTCTTTTGATCCCTGAGAAGAGATATCTTTTAGA
TCATAAATATAAAAAAAGAATATACAGAGGCAGAGTGATT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAATATGGGGAACATTTTTGAAA
ATGTATATTTTTCCCCTGAAATTAGGTATAGAAACTGTTCTTTTATGTGT
ACTTTATAAACCTTCGAAGAAATATAACTAATTTTAAAACTGTAAAACCT
ACATAAAATTTGGCATTACTATCATTGCAATAAGCTACATAACTTATTAC
ACAATATTTAAAAAGCTAAATTGAAGATATATTCATGTTCAAAACATTTT
AATGCAAGTAATTTAATGACTAATAATATGAAAGAAAATGCCCATTTATA
AAATAGCCAGTTGTTTTTTTATAGCACCCCCCCCCCCCCCATTATTTATT
TGTCTTCATTGAACAATGAGGTATATACAGTTTTATTTATTTTATTTATA
AGAAATGGTCTCTAAGATATTAATTAGAATTCCTAAATTCACATAGTGTC
TTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTT
GGGGAGGAAAGGGTTTATTCGGCTTACATTTCCATACTGCTGTTGATCAC
CAAAGAATGCAGGACTGGAACTCAAGCAGGTCAGATAGCAGGAGCTGATG
CTGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCACCTGGCTTGCT
CAGCCTGTTCTCTTATAAAACCCAAGACTACCAGCCCAGAGATGGTCCCA
CCCACAGGGGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_m18.b1 MSMg01no264_m18.b1 CHROMAT_FILE:
MSMg01no264_m18.b1 PHD_FILE: MSMg01no264_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:05 2005
         (355 letters)



>mm_chr6_76590498_76591252
          Length = 755

 Score =  621 bits (321), Expect = 0.0
 Identities = 345/353 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcaggtggtttctgctaaatgtttgtcttttcaagataagaactataatcttcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcaggtggtttctgctaaatgtttgtcttttcaagataagaactataatcttcatca 260

                                                                       
Query: 61  accagccgagatcagcacatgcttggtgcaattttaactcactctacatctatacaaact 120
           ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct: 261 accagccgagatcagcacacgcttggtgaaattttaactcaccctacatctatacaaact 320

                                                                       
Query: 121 tatgtttctgagctacgctactgtaacatagagtagtgagattcttatgtgtatatacag 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tatgtttctgagctacgctactgtaacaaagagtagtgagattcttatgtgtatatacag 380

                                                                       
Query: 181 gagcacagcattatattagtatcactttctcaccacagttagagatacaggatgacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcacagcattatattagtatcactttctcaccacagttagagatacaggatgacagca 440

                                                                       
Query: 241 catgttcagagagacacttttgactctgttttagtaatcccgtcttttgatccctgagaa 300
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgctcagagatacacttttgactctgttttagtaatcccgtcttttgatccctgagaa 500

                                                                
Query: 301 gagatatcttttagatcataaatataaaaaaagaatatacagaggcagagtga 353
           ||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 501 gagatatcttttagatcataaatataataaaagaatatagagaggcagagtga 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no264_m18.g1 MSMg01no264_m18.g1 CHROMAT_FILE:
MSMg01no264_m18.g1 PHD_FILE: MSMg01no264_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:05 2005
         (289 letters)



>mm_chr6_76746007_76746695
          Length = 689

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatatggggaacatttttgaaaatgtatatttttcccctgaaattaggtatagaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgaatatggggaacatttttgaaaatgtatatttttcccctgaaattaggtatagaaact 429

                                                                       
Query: 61  gttcttttatgtgtactttataaaccttcgaagaaatataactaattttaaaactgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gttcttttatgtgtactttataaaccttcgaagaaatataactaattttaaaactgtaaa 369

                                                                       
Query: 121 acctacataaaatttggcattactatcattgcaataagctacataacttattacacaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 acctacataaaatttggcattactatcattgcaataagctacataacttattacacaata 309

                                                                       
Query: 181 tttaaaaagctaaattgaagatatattcatgttcaaaacattttaatgcaagtaatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttaaaaagctaaattgaagatatattcatgttcaaaacattttaatgcaagtaatttaa 249

                                                           
Query: 241 tgactaataatatgaaagaaaatgcccatttataaaatagccagttgt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgactaataatatgaaagaaaatgcccatttataaaatagccagttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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