BAC Information

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BAC

Clone NameMSMg01-264P11
Chromosome6 (Build37)
Map Location 11,389,691 - 11,389,969
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264P11.T7 (MSMg01no264_p11.b1)MSMg01-264P11.TJ (MSMg01no264_p11.g1)
ACCAG406361AG406362
length722753
length of high quality
(start - end)
312 (45 - 356)280 (81 - 360)
definitionCHROMAT_FILE: MSMg01no264_p11.b1 PHD_FILE: MSMg01no264_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:18 2005CHROMAT_FILE: MSMg01no264_p11.g1 PHD_FILE: MSMg01no264_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGTACCTCATTTTTTAAAGGGTTATTTGGTTCTC
TGAAGTCTATCTTCATGAGTTCTTTGTATATATTGGATATTAGCCATCTA
TTGGATACAGGATTGATAAAGATCTTTTCCCAATCTGTTGGTTGCCATTT
TGTCCTATAGTGTCTCTAGGCCTTACAGAAACTTTTCAATTTTATGGGGT
ACCATTTGTTGATTGTTGATCTTAGAGCGTGAGCCACTGTTTTTCTAGTC
CAGAAATTTCCGCCTGTGCCCATGTGTTCCAGGCTCTTCCCCACTTTCTC
TTCTATTGTTTTGGCGCCCNTCGTTCCATGTGGAGGTCCTTTATCCAGTT
GGACCTTAGCTTTGTGCAAAGAAAATAAAAATGCATTGATTTACATTCTT
GTACATGCTGACTGCACTTAAACCAGCATGATTTGTTGTAAATGCTGTCT
TTTTTCTACTGGATTGTTTTAGCTTCTTTGTCAAAGATCAAGTGACTATA
GGTGTGTGGGTTTCTAGGTCTTCAATTCTGTTCTATTGATCTACATGCCT
GTCCCTGAAAAATACCATGCAGTTTTTATCATTATTTCTCTGTCATACAG
CTTGAAGTAAGGGATGGTGATTTTTCCCCCAGAAGTTCTTTTATCGTTGA
GAATAATTTTCACTATCATGGN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGATAAGTTTCAGGTTA
GCGTCAGCTTCTGAGTAAGAACCTGTTTAGAGAAAAAGCTATAGGGTAAT
AATCCCCTATCAAAATTGGCAGTGTAAATTTACAGGTATAAAGTTTTACA
AGTATCCCAGGCATGCACCTTTCCTTGGTTGTAACATTTTAATAATGAAC
TAAAAGTTTTACTGCAGAAGTAAAAAAATTCTGCATTGTTGCAAATTGCA
AAATATAAAGAAAATGAGATCTTTTCCTTTGGAAATCTTGATGTGTTTTC
CATAAGGCCATATTTTTAGCACACTCACCCCGCTTTTTATTTTATAGTAT
GTATTGAATAATGTCCTGAGAGGTCAACACTCAAATTTGTGTTTGATCAT
GAGGCTTCTTCTTCCCTCTTCTGGTCTAATCCTATCTATGTATATGATTC
TTGCATCCCATATTATATGTAGTAGAATGAAGGCAGCTCAAGTTAATGGT
TTGTTATTGAAGACTGTCAACAAAATTTAGTGAAAACTTACATTTATGGT
AAAATCTAGAATGATTTATACTTAGTGTATAACTTGATAGTACCAGCATT
GACTTACAATGATATCATTGAAAATAGCTGCTGGACTAAAGATTAAATAT
GCCTTAAAACTGCATATTTCCAAAAGTTGGAACTCTAGATGCTTATTTAT
CAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_p11.g1 MSMg01no264_p11.g1 CHROMAT_FILE:
MSMg01no264_p11.g1 PHD_FILE: MSMg01no264_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:18 2005
         (280 letters)



>mm_chr6_11389491_11390169
          Length = 679

 Score =  511 bits (264), Expect = e-149
 Identities = 276/280 (98%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgataagtttcaggttagcgtcagcttctgagtaagaacctgtttagagaaaaagct 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 479 acctgataagtttcaggttagcgtcagcttctgagtaagaaattgtttagagaaaaagct 420

                                                                       
Query: 61  atagggtaataatcccctatcaaaattggcagtgtaaatttacaggtataaagttttaca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atagggtaataatcccctttcaaaattggcagtgtaaatttacaggtataaagttttaca 360

                                                                       
Query: 121 agtatcccaggcatgcacctttccttggttgtaacattttaataatgaactaaaagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agtatcccaggcatgcacctttccttggttgtaacattttaataatgaactaaaagtttt 300

                                                                       
Query: 181 actgcagaagtaaaaaaattctgcattgttgcaaattgcaaaatataaagaaaatgagat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 actgcagaagt-aaaaaattctgcattgttgcaaattgcaaaatataaagaaaatgagat 241

                                                   
Query: 241 cttttcctttggaaatcttgatgtgttttccataaggcca 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttttcctttggaaatcttgatgtgttttccataaggcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 679
Length adjustment: 9
Effective length of query: 271
Effective length of database: 670
Effective search space:   181570
Effective search space used:   181570
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)