BAC Information

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BAC

Clone NameMSMg01-265A10
Chromosome6 (Build37)
Map Location 89,261,336 - 89,261,622
singlet/doubletsinglet
Overlap genenone
Upstream geneEefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik
Downstream genePlxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265A10.T7 (MSMg01no265_a10.b1)MSMg01-265A10.TJ (MSMg01no265_a10.g1)
ACCAG406407AG406408
length810756
length of high quality
(start - end)
270 (102 - 371)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no265_a10.b1 PHD_FILE: MSMg01no265_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:23 2005CHROMAT_FILE: MSMg01no265_a10.g1 PHD_FILE: MSMg01no265_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTTTTTTTGNCCCNCANNNGNATTTGCTTTTTTCCCCCCTATTTT
TATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTTGTATACCAGGCTGGCCTCGAACTGAGAAATCCGC
CTCCCTCTGCCTCCCGAGTGCTTGTATTACCGGCGTGCACCACCACTTCC
AGGGACACTGAAACTTATAGTGGAGAAAGTGGGGAAAAGCCTCGAAGATA
TTGGCACAGGTGAAACATTCCTGAATAGAACAGCAATGGCTTGTGCTGTA
AGATCGAGAATTGACAAATGGGACCTTATGAAACTGCAAAGCTTCTGTAA
GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA
GGATCTTTACCTATCCTAATTTTTTATAGAGGACCACCATCCAATATATA
TAAAGAACTCAAGAAGGTAGACTCCACACAAACAAATAACCCCATTAAAA
AATGGGGCTCAGAGCTAAACAAAGAATTCTCACCTGAGGAATACCGGATG
GCTGAGAAACACCTGATAAAAAAAATGTTCAGCATCCTTTAATCATCAGG
GAAATGAAAAATCAAACAACCCTGAGATTCCATCTCACACCAATCAGAAT
GGTTAAAATCAAAAAATTCAGGTGACACCTCAAGAATGCCGAGGAAGTGG
ACAAAAGAGCAACTCTCCCCCCGTTGTTGGTGGCAATTGCAAAGTTTGTA
CAACCACTCTGGGAAAATATATCTTGGGGTTTTCCCTCAAAAAAATTGGA
CATGGCTAAN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTGCATCCCAACTTGACTGTAC
ATATGTCCATCTGACTGTCCTTCCTACATTCCCTCACTGCTCCTAATTGG
GATTCCAGGACCCAAGCTGTATGGGATACAGCACCCAAGAGAACAGTCTG
TGCTCACATCACCCATGGTGACATTCAGTGTTTAGCCTGCCCAGCTGTTC
AAGGTGACATTTCCTCTGGCACTGACAAGGGACCTGAGCTCTCTTTCCTA
GTGTCAGGAGACCCACGTGCTGTGCCATGGGTGACCTTAAGCCATCTGGG
GAAGAAGAAAAGGAATTTTATTTTCCGCCCCCCTCGCCAAAGATGATCTG
GAACCAAGACATTTTCAAAACAGAGACTGCTAAAAAAGATGTGTTTAATA
GCATGGGATTGAGGCAGTTTTAAAGTCTGAGGTTTGACCCTGCCTCCCTG
TGGGGCAATATTGGAGAAGTCACAGATGGTTTGGAAGCACATCGGGGAAC
CCAACTGAGCGGCGTGTATACGCACTTAACGACAGATGCCACAAGCTGAG
GGCAGTGCTGGGGGTCGCAATCCTCCTCCTTTTGAGGCTGGCACACATGT
GACCTCTGGAAAATCAGAACTTTGCTCGTGAGGTAGAGCTCACAAGGTTC
TCATTAAAGCTGCTTTCTTCCCTTGGAAAAAATATGTAAGGTTTGGGTTG
ACTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_a10.g1 MSMg01no265_a10.g1 CHROMAT_FILE:
MSMg01no265_a10.g1 PHD_FILE: MSMg01no265_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:23 2005
         (287 letters)



>mm_chr6_89261136_89261822
          Length = 687

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgcatcccaacttgactgtacatatgtccatctgactgtccttcctacattccctca 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cactgcatcccagcttgactgtacatatgtccatctgactgtccttcctacattccctca 428

                                                                       
Query: 61  ctgctcctaattgggattccaggacccaagctgtatgggatacagcacccaagagaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctgctcctaattgggattccaggacccaagctgtatgggatacagcacccaagagaacag 368

                                                                       
Query: 121 tctgtgctcacatcacccatggtgacattcagtgtttagcctgcccagctgttcaaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tctgtgctcacatcacccatggtgacattcagtgtttagcctgcccagctgttcaaggtg 308

                                                                       
Query: 181 acatttcctctggca-ctgacaagggacctgagctctctttcctagtgtcaggagaccca 239
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acatttcctctgg-agctgacaagggacctgagctctctttcctagtgtcaggagaccca 249

                                                           
Query: 240 cgtgctgtgccatgggtgaccttaagccatctggggaagaagaaaagg 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cgtgctgtgccatgggtgaccttaagccatctggggaagaagaaaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)