BAC Information

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BAC

Clone NameMSMg01-267K22
Chromosome6 (Build37)
Map Location 76,590,703 - 76,746,494
singlet/doubletdoublet
Overlap geneLOC100042956
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneCtnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267K22.T7 (MSMg01no267_k22.b1)MSMg01-267K22.TJ (MSMg01no267_k22.g1)
ACCAG408333AG408334
length757739
length of high quality
(start - end)		368 (390 - 757)661 (75 - 735)
definitionCHROMAT_FILE: MSMg01no267_k22.b1 PHD_FILE: MSMg01no267_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:48 2005CHROMAT_FILE: MSMg01no267_k22.g1 PHD_FILE: MSMg01no267_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,590,703 - 76,591,062)(76,745,944 - 76,746,494)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATCATGCACTCACGAGACAGAGGAAACATTTTATTGGAATGTAGG
CTGGACAGCTGAGCTAATGCTTTGAAAGGGTCTAGCAGCTCTCCAAGTTC
TTACAGATTTTACAGGTCAGGTAACAAGTGGTCTTTGAGTTTTCTGCCCA
TTGAAAGAAATTTCCTTCAACGTTAGGCATGTTTACAGGAATTGAAATTG
CAGGAACAAACATTTTCTTTGCAGGTCGCAATAAAATATACAAACACTTG
GCAAGTGGCAATAAAAACAAGAATTTCTTTCTAAAGGAACAGGACCCATT
TATGGTCTCTGTCCTAATTGCNGTGACANNTCTTTCCCCAGGTGGTTTCT
GCTAAATGTTTGTCTTTTCAAGATAAGAACTATAATCTTCATCAACCAGC
CGAGATCAGCACATGCTTGGTGCAATTTTAACTCACTCTACATCTATACA
AACTTATGTTTCTGAGCTACGCTACTGTAACATAGAGTAGTGAGATTCTT
ATGTGTATATACAGGAGCACAGCATTATATTAGTATCACTTTCTCACCAC
AGTTAGAGATACAGGATGACAGCACATGTTCAGAGAGACACTTTTGACTC
TGTTTTAGTAATCCCGTCTTTTGATCCCTGAGAAGAGATATCTTTTAGAT
CATAAATATAAAAAAAGAATATACAGAGGCAGAGTGATTTTCACAGAGGA
CTACAAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAATATGGGGAACATTTTTGAAAAT
GTATATTTTTCCCCTGAAATTAGGTATAGAAACTGTTCTTTTATGTGTAC
TTTATAAACCTTCGAAGAAATATAACTAATTTTAAAACTGTAAAACCTAC
ATAAAATTTGGCATTACTATCATTGCAATAAGCTACATAACTTATTACAC
AATATTTAAAAAGCTAAATTGAAGATATATTCATGTTCAAAACATTTTAA
TGCAAGTAATTTAATGACTAATAATATGAAAGAAAATGCCCATTTATAAA
ATAGCCAGTTGTGTAGAAATATATTTTAAATACACATTATTTATTTGTCT
TCATTGAACAATGAGGTATATACAGTTTTATTTATTTTATTTATAAAAAA
TGGTCTCTAAGATATTAATTAGAATTCCTAAATTCACATAGTGTCTTAGT
CAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGA
GGAAAGGGTTTATTCGGCTTACATTTCCATACTGCTGTTGATCACCAAAG
AATGCAGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGCAGAG
GCCATGGAGGGATGTTCTTTACTGGCTTGCTTCACCTGGCTTGCTCAGCC
TGTTCTCTTATAAAACCCAAGACTACCAGCCCAGAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_k22.b1 MSMg01no267_k22.b1 CHROMAT_FILE:
MSMg01no267_k22.b1 PHD_FILE: MSMg01no267_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:48 2005
         (368 letters)



>mm_chr6_76590503_76591270
          Length = 768

 Score =  627 bits (324), Expect = 0.0
 Identities = 351/360 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtggtttctgctaaatgtttgtcttttcaagataagaactataatcttcatcaaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtggtttctgctaaatgtttgtcttttcaagataagaactataatcttcatcaaccag 260

                                                                       
Query: 61  ccgagatcagcacatgcttggtgcaattttaactcactctacatctatacaaacttatgt 120
           |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ccgagatcagcacacgcttggtgaaattttaactcaccctacatctatacaaacttatgt 320

                                                                       
Query: 121 ttctgagctacgctactgtaacatagagtagtgagattcttatgtgtatatacaggagca 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgagctacgctactgtaacaaagagtagtgagattcttatgtgtatatacaggagca 380

                                                                       
Query: 181 cagcattatattagtatcactttctcaccacagttagagatacaggatgacagcacatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 cagcattatattagtatcactttctcaccacagttagagatacaggatgacagcacatgc 440

                                                                       
Query: 241 tcagagagacacttttgactctgttttagtaatcccgtcttttgatccctgagaagagat 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagagatacacttttgactctgttttagtaatcccgtcttttgatccctgagaagagat 500

                                                                       
Query: 301 atcttttagatcataaatataaaaaaagaatatacagaggcagagtgattttcacagagg 360
           |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 501 atcttttagatcataaatataataaaagaatatagagaggcagagtgactttcacagagg 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_k22.g1 MSMg01no267_k22.g1 CHROMAT_FILE:
MSMg01no267_k22.g1 PHD_FILE: MSMg01no267_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:48 2005
         (661 letters)



>mm_chr6_76745944_76747004
          Length = 1061

 Score = 1035 bits (535), Expect = 0.0
 Identities = 547/551 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatatggggaacatttttgaaaatgtatatttttcccctgaaattaggtatagaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgaatatggggaacatttttgaaaatgtatatttttcccctgaaattaggtatagaaact 492

                                                                       
Query: 61  gttcttttatgtgtactttataaaccttcgaagaaatataactaattttaaaactgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gttcttttatgtgtactttataaaccttcgaagaaatataactaattttaaaactgtaaa 432

                                                                       
Query: 121 acctacataaaatttggcattactatcattgcaataagctacataacttattacacaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acctacataaaatttggcattactatcattgcaataagctacataacttattacacaata 372

                                                                       
Query: 181 tttaaaaagctaaattgaagatatattcatgttcaaaacattttaatgcaagtaatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttaaaaagctaaattgaagatatattcatgttcaaaacattttaatgcaagtaatttaa 312

                                                                       
Query: 241 tgactaataatatgaaagaaaatgcccatttataaaatagccagttgtgtagaaatatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 311 tgactaataatatgaaagaaaatgcccatttataaaatagccagttgtgtagaaatagat 252

                                                                       
Query: 301 tttaaatacacattatttatttgtcttcattgaacaatgaggtatatacagttttattta 360
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttaaatagatattatttatttgtcttcattgaacaatgaggtatatacagttttattta 192

                                                                       
Query: 361 ttttatttataaaaaatggtctctaagatattaattagaattcctaaattcacatagtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttttatttataaaaaatggtctctaagatattaattagaattcctaaattcacatagtgt 132

                                                                       
Query: 421 cttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagttggggaggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagttggggaggaa 72

                                                                       
Query: 481 agggtttattcggcttacatttccatactgctgttgatcaccaaagaatgcaggactgga 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 71  agggtttattcggcttacatttccatactgctgttgatcaccaaaggatgcaggactgga 12

                      
Query: 541 actcaagcagg 551
           |||||||||||
Sbjct: 11  actcaagcagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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