BAC Information

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BAC

Clone NameMSMg01-267N22
Chromosome6 (Build37)
Map Location 16,785,714 - 16,945,792
singlet/doubletdoublet
Overlap geneTcfec, EG435881
Upstream geneLOC100041116
Downstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267N22.T7 (MSMg01no267_n22.b1)MSMg01-267N22.TJ (MSMg01no267_n22.g1)
ACCAG408467AG408468
length760737
length of high quality
(start - end)		324 (46 - 369)322 (389 - 710)
definitionCHROMAT_FILE: MSMg01no267_n22.b1 PHD_FILE: MSMg01no267_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:02 2005CHROMAT_FILE: MSMg01no267_n22.g1 PHD_FILE: MSMg01no267_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,945,475 - 16,945,792)(16,785,714 - 16,786,033)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAGAAGGCTCTTGTATTTTATTTCCTCTCTTGCTCTGGGGCAG
AGACTGCTCTACTTCACAGGGTGAACTTGTTACCTCTTGCCCTGAGAGGC
AGAGACGCACTGCCTGAACGCTTCCATTTTGAGACACCTTGTAGGAATCC
TTCCAATTTCTTTAGAGGAGGAAGCTCTCAGCAGTCAGTCTGGTACACTG
CTGCCACAGAAGCCCGAGGATGCTGTTTTCCAGGCAGAGGTGGCAGTCTC
CCATAGTATAGACCCAATAGGGTTTTGGTGCGGAGGGAAAAAGACAGCAC
TTTGCAATAGCTCTATATCTTTTATTGACCCCCCCGCCCAGCAATTATTA
TTGTATTTCAGTCTCGTAGCCTTCGCTTTTTGTGAAGAAATAAGAAAGGG
AAACATTAGGTGACAGTTTAAGCCTTTGCTTAAGGGAGAAAAAAAAAGCC
TTTAATTTATTAAAATTCAAATTAAACAAATCTCCTGCTGTTACTAAAGT
TTTCTGAACTATTTTGTGTAAATGTTATTCATCCTTTGAAATCAGTACAA
TTAAAAGTTGTATTAAGAGTACCTCCTTTCAAGGCTATGAACTTTTTCTC
TAAGGATTTTTATCTCATTTTAGCTCTTTGATTTTTTTTTAAACGTGTCT
CAGAAAAGAAGATACACATTTTCTTTAATTGCAGCTTAAACCTGCATGGT
TATATTCTGC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAGAACTTACAAAATCTTTTACAT
TAATATGAAATAATGATTTACATGACTATTATTCACTCTTAGATATTATT
GCTTCTGAATAGAAATTTTAATAGAATAGTTAAGAAGCCCTTATATAGTA
AAATTAATCCCAGAATGAAAATAAGTGTCAAAAGAAAGTAATAAAGTGAC
TTTTTGTGGGAGAGCTAAACGCAATATCATGATTCTACCATTACAGTTTT
TATATTTTTAGTGAAAATTGCTTTTATTATTAACTCTAAGATTAAAATCT
ATGTGCAGTATTTCTGTTTTATTGAACTCACCCACCGTGCATTACTGATG
ACTAAACCTAAATTTTTTAAGATTGTTTCAAATGTACCAATCTTTTAACC
CATTTCCTAATATGGTTGCTTTTGTTTCTAAGAAAGAAAAAATACATTCT
TCCCTGAATGATGGTCCTGAGTGGTTTCCCAACAGCTGAGTTGGGAAACA
TTTCCTTATGCAACAGAGCAAGCTTCCTGAAACCATTTAATCAATTTTTC
TACACAAATGATAGCATTGTAATTTTTAAAGCTGGACTCAGAATACTATA
TTTACATATTTTAATATTTGTAAATATTTAAGATAAATTCATAGAATTAA
ACATTTTGGAAAAACTTTAAGTATTAGCATAGAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_n22.b1 MSMg01no267_n22.b1 CHROMAT_FILE:
MSMg01no267_n22.b1 PHD_FILE: MSMg01no267_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:02 2005
         (324 letters)



>mm_chr6_16945271_16945994
          Length = 724

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagaaggctcttgtattttatttcctctcttgctctggggcagagactgctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcatcagaaggctcttgtattttatttcctctcttgctctggggcagagactgctc 463

                                                                       
Query: 65  tacttcacagggtgaacttgttacctcttgccctgagaggcagagacgcactgcctgaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tacttcacagggtgaacttgttacctcttgccctgagaggcagagacgcactgcctgaac 403

                                                                       
Query: 125 gcttccattttgagacaccttgtaggaatccttccaatttctttagaggaggaagctctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcttccattttgagacaccttgtaggaatccttccaatttctttagaggaggaagctctc 343

                                                                       
Query: 185 agcagtcagtctggtacactgctgccacagaagcccgaggatgctgttttccaggcagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agcagtcagtctggtacactgctgccacagaagcccgaggatgctgttttccaggcagag 283

                                                                       
Query: 245 gtggcagtctcccatagtatagacccaatagggttttggtgcggagggaaaaagacagca 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 282 gtggcagtctcccatagtatagacccaatagggttttggggcggagggaaaaagacagca 223

                             
Query: 305 ctttgcaatagctctata 322
           ||||||||||||||||||
Sbjct: 222 ctttgcaatagctctata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_n22.g1 MSMg01no267_n22.g1 CHROMAT_FILE:
MSMg01no267_n22.g1 PHD_FILE: MSMg01no267_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:02 2005
         (322 letters)



>mm_chr6_16785514_16786235
          Length = 722

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcattactgatgactaaacctaaattttttaagattgtttcaaatgtaccaatcttttaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gcattactgatgactaaacctaaattttttaagatcgtttcaaatgtaccaatcttttaa 260

                                                                       
Query: 61  cccatttcctaatatggttgcttttgtttctaagaaagaaaaaatacattcttccctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatttcctaatatggttgcttttgtttctaagaaagaaaaaatacattcttccctgaa 320

                                                                       
Query: 121 tgatggtcctgagtggtttcccaacagctgagttgggaaacatttccttatgcaacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatggtcctgagtggtttcccaacagctgagttgggaaacatttccttatgcaacagag 380

                                                                       
Query: 181 caagcttcctgaaaccatttaatcaatttttctacacaaatgatagcattgtaattttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagcttcctgaaaccatttaatcaatttttctacacaaatgatagcattgtaattttta 440

                                                                       
Query: 241 aagctggactcagaatactatatttacatattttaatatttgtaaatatttaagataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctggactcagaatactatatttacatattttaatatttgtaaatatttaagataaat 500

                               
Query: 301 tcatagaattaaacattttg 320
           ||||||||||||||||||||
Sbjct: 501 tcatagaattaaacattttg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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