BAC Information

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BAC

Clone NameMSMg01-268A14
Chromosome6 (Build37)
Map Location 82,764,255 - 82,764,568
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2
Downstream geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268A14.T7 (MSMg01no268_a14.b1)MSMg01-268A14.TJ (MSMg01no268_a14.g1)
ACCAG408591AG408592
length723726
length of high quality
(start - end)
317 (45 - 361)223 (139 - 361)
definitionCHROMAT_FILE: MSMg01no268_a14.b1 PHD_FILE: MSMg01no268_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:15 2005CHROMAT_FILE: MSMg01no268_a14.g1 PHD_FILE: MSMg01no268_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGATTAAAGGTGGGTACCACAATACCCAGTGTTCCATATTACTT
TTTTTTTTTTTTTTTTTTTGACAGTGTCTCTCACTGAACCTGAAGCTCAG
ATTCCACTGAGCTGGCCAGTGAGCTCCAGGGCCCTCTTGTCTCTGCCTCC
TCAGAACTAGAGCTGTATGTGTGCACAACCACACCCAGATTTTTGTATGA
GATCCTCACACTTGTGTAGCAACCACCACTGTGACAGAGCCAGCTCTCTG
AGCCTTTCCTGAACAGTGCCTATCCCCTGAAAGGACTCACATTCGTGGTT
ACTCTTGGTTTCTTTCTCAGCCCCCGCCCCCCCCACTCACTCCAGCCACG
TTGAACCTCGGGTCATCTCCCAAAATCAATCAAATAGATCTTCTCTCCAA
GCCTTTGCTTTATAAAATGCAGAGCCAAGGCTGGAGTGTAACTCAGCTGT
AGAGCAGTTGCCTTGCCTGTGTGAGGCTCTGGATTTAATCCCCAGCACTA
GACAAATAGCTATAAATAAAACACAAACACGTGTTTAAAAAACAGAAGAC
GCATCAGCTATAATTTGCTGCCCAGGTGTAAAACACTGCTGGCCCCTGAG
TGTGGTTGGGAAGGGAACTGAGGGAAAGAAGCCATTAGACAAGTTACCCA
CGAGTCAGAGCACTCTAGGGAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATATATAGACCAGCTGGCTTCGAACT
CACAGATATCTGCCTGTCTTGGCCTCATGAGTGCTGGGATTAAAGGTATG
CACTACTATACCCCACAATAAATAAATAAATAAATATTTAAAAATCTAAA
TTGTTAAAAACCAAAAAATAAAAAGTAAAAAAGAATTGTTTAAACCCAAA
AAAATAAATAAAAAATAATTGTTATGCCATTTGGAACAAGTGATTTCTTT
ATCATTATGTAATATTCTTCTTTGCCTCGGATGACTTTATGCACCTTGAT
ATTTCTTTGTTTTTTATTATTACCCCCCCCCTCGCTTTGACTCGTGTTTT
TCTCCACACGCTTACTTTTAACCCCAAAAAATCTTTAATTTAATATGGGA
TTCTTTTTTTTTAAACTAATTTTCTTTTAAGATTTATTTATTATATGTAA
GCACACTGTAGCTGTTTTCAGACACACCAGAAAAGGGTGCCAGATCTCAT
TACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGAC
CTTCAAAACAGCAGTCAGTGCCCTTAACCGCTGAGCCATCTCTCCAGCCC
GGGGCGATTCTTTTAAAAATTAAATTATTTATTCCTTATTGGCGTGTGCT
CATGCATTTGTGCCACGGTGCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_a14.b1 MSMg01no268_a14.b1 CHROMAT_FILE:
MSMg01no268_a14.b1 PHD_FILE: MSMg01no268_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:15 2005
         (317 letters)



>mm_chr6_82764055_82764771
          Length = 717

 Score =  580 bits (300), Expect = e-170
 Identities = 309/314 (98%), Gaps = 4/314 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgggattaaaggtgggtaccacaatacccagtgttccatattactttttttttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctgggattaaaggtgggtaccacaatacccagtgttccatattactttttttttt 260

                                                                       
Query: 65  ttttttttttt----gacagtgtctctcactgaacctgaagctcagattccactgagctg 120
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttttttttttgacagtgtctctcactgaacctgaagctcagattccactgagctg 320

                                                                       
Query: 121 gccagtgagctccagggccctcttgtctctgcctcctcagaactagagctgtatgtgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccagtgagctccagggccctcttgtctctgcctcctcagaactagagctgtatgtgtgc 380

                                                                       
Query: 181 acaaccacacccagatttttgtatgagatcctcacacttgtgtagcaaccaccactgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaccacacccagatttttgtatgagatcctcacacttgtgtagcaaccaccactgtga 440

                                                                       
Query: 241 cagagccagctctctgagcctttcctgaacagtgcctatcccctgaaaggactcacattc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 cagagccagctctctgagcctttcctgaacagtgccaatcccctgaaaggactcacattc 500

                         
Query: 301 gtggttactcttgg 314
           ||||||||||||||
Sbjct: 501 gtggttactcttgg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)