BAC Information

Click to search

BAC

Clone NameMSMg01-268K09
Chromosome6 (Build37)
Map Location 29,232,844 - 29,233,129
singlet/doubletsinglet
Overlap geneAI507611
Upstream geneLOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik
Downstream geneBC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268K09.T7 (MSMg01no268_k09.b1)MSMg01-268K09.TJ (MSMg01no268_k09.g1)
ACCAG409002AG409003
length726728
length of high quality
(start - end)
314 (46 - 359)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no268_k09.b1 PHD_FILE: MSMg01no268_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:58 2005CHROMAT_FILE: MSMg01no268_k09.g1 PHD_FILE: MSMg01no268_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATTCCACTGTGCATTCTGAGAATTGACCTTAGGTCATAAGGCT
TTGCTCAGTGTCCTAGCTAGCTTCAGCTGTCAACTTGACATAGCCTAAAG
CCACCTGATGGTGTTTCAATGGAGGAAGGAGTTCCACCAGGATCAGAGCT
GCCTGTGACCTATGTGAGGTATTGTATTGACAGATGACTGATGTGGGAGG
GTCCAGCCCACTTTGGGTAGTACCATGCCTGGGCAATCGGGTCTGGGATA
TGTAAGAAAACTAGTATTGTGAGCCAGGAAATAAGTCACCAAACAGCATT
CTTCCATTGGTTCNTATTTCANTTCTGCCCTGTCTTCCTTAAATAATGGA
TTGTGACCTGAGGGCACCAACAAACAAAAAACATCCATCCTAGGGCAGTG
TCTTAGGGTTTCCACTGTTGTGAAGAGACACCATGACCATGGCAACTCTT
ATAAAAGACAACATTTAACTGGGGCTAGCTTACAGGTTCAGAGGTTTAGT
CCATTATCTTCGAGGTGGGAGCATAGCAGCATCCAGGCAGGCATGGTGCT
GTAGGAGGAGCTGAGAGTTCTATATCTTCATCTGACTGCAGCCAGGAGAG
ACTGTCTCCCAGGAAGCTAGGAGGAGGGTCACAAGCCCACCCCCCCAGTG
ACACACTTCCTCCAACAAGCCCACTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCTGAGGTTCTCACCGCATCGA
TCCACTTCCCATTACGGTGCCAGTTTGGGAAAACTGTGTTTGGCGTTTCC
AGTGCTCCACTCTCCGGTGCTGCCTAAGTGGACAGCTAGGTTTCTCAACA
CAACACAGCGCTATACGGGGTTGTTATTCACAAAACTTTATGTCTGAGTG
ACTGGGGAGAGGAACAAAAGAGACCAGTAGCCGGCAATGCTCTAGCTCAC
CCATCTGAGATGACCCTGCCTGGGGTCTGCAGCCTTCCTTGCCTTGTCTG
CTATTTCTTTCTTTATTACGCGCCCCGCCCCTGCATTTCCAGGTCACTAA
GCAAGGAAACTGGATGGATGCCCATGAAAGAACTAACACTATGATCCTTG
GAGTAACCTCTTCTGTGCCCTCCTTGCCACTCCCCAATATCCTCCTGATG
GCCAATGTCACCTGGCCTCACGGTCCGTTTTCCACCTGTAGCACACTTGG
TGCCCCTGTCATCACCCTCAGTAGGTAAAGGAAGGCTGGAGGGAGGCGGC
TGGTGGGATGATTGTTTTANGCGTTNTTTTGTGTTGCCGTTCATGCTTTT
TTTTTTTTGTAATCCTATTTTCTCTCACTAATTTAACTCTTCCGAACTCA
CGTCATTTCTTTATAACTTCCCATTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_k09.g1 MSMg01no268_k09.g1 CHROMAT_FILE:
MSMg01no268_k09.g1 PHD_FILE: MSMg01no268_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:58 2005
         (286 letters)



>mm_chr6_29232644_29233329
          Length = 686

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%), Gaps = 2/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctgaggttctcaccgcatcgatccacttcccattacggtgccagtttgggaaaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctgaggttctcaccgcatcgatccacttcccattacggtgccagtttgggaaaactg 260

                                                                       
Query: 61  tgtttggcgtttccagtgctccactctccggtgctgcctaagtggacagctaggtttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tgtttggcgtttccagtgctccactctccggtgctgcctaagtggacagctaggtttct- 319

                                                                       
Query: 121 a-acacaacacagcgctatacggggttgttattcacaaaactttatgtctgagtgactgg 179
           | ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agacacaacgcagcgctatatggggttgttattcacaaaactttatgtctgagtgactgg 379

                                                                       
Query: 180 ggagaggaacaaaagagaccagtagccggcaatgctctagctcacccatctgagatgacc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggagaggaacaaaagagaccagtagccggcaatgctctagctcacccatctgagatgacc 439

                                                          
Query: 240 ctgcctggggtctgcagccttccttgccttgtctgctatttctttct 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgcctggggtctgcagccttccttgccttgtctgctatttctttct 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)