BAC Information

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BAC

Clone NameMSMg01-268L23
Chromosome6 (Build37)
Map Location 26,126,682 - 26,126,999
singlet/doubletsinglet
Overlap geneLOC100041210
Upstream geneGpr37, Pot1a, EG626912
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268L23.T7 (MSMg01no268_l23.b1)MSMg01-268L23.TJ (MSMg01no268_l23.g1)
ACCAG409072AG409073
length7341,043
length of high quality
(start - end)
322 (46 - 367)---
definitionCHROMAT_FILE: MSMg01no268_l23.b1 PHD_FILE: MSMg01no268_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:05 2005CHROMAT_FILE: MSMg01no268_l23.g1 PHD_FILE: MSMg01no268_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGTTGCTTTCACATATTATAGAAACTTTGGGAGGAGCAGGTA
GATTCACATAGGGTAAAACTACATCAGACCTATAGTCATGTAGTTTTAAA
TTTTACCTGTTATGACAATGATACTTTTATGCTTATCTCATCCAAACTGA
GTGGTTAGCATCTATTACTAGGGTGAGCTAATATGAGTGTACTTCCAGAG
CTACCATCTAGTGTGATGTCCCAATGACGCTAACATCTGATACCTGCCGA
ATGGTAGAGTCTGGGAAATATTTCCTGAGAATTTGCAGGAACATTTGGGT
ATGAAAGTATTGTTTTAATGGTTGACACCCCCCCCCAAAGTCTGAGGATG
AGGAAAGAAGAGTAAAATAATTTAAAAGCTAAACAAAACTGTACTTGCTG
TGATTAGTAATAGAAGGTTTTACAATTTTTAAACACATTTTAAATTTTGG
CTTTACCTGTATGTGTGTATCTGTGTGTTTCTGTGTGAGTTTATGCCACA
CATTTGAATGAGGTAGAGTAATCCAGACAAAGATGACCAATCTCTTGGGA
TGGGAGGTACAGGCTGTTGAAATTCTGCTCAGTGTGTGTGCTGGGATGCA
AACGTGGTTCTTTCAAAGTATAAACTGCTTGTAACTACTGAGCAATCTTA
CCAGTTCTGAAAGTCTTTTAGTCCTTANAAATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGGAATTCCAGGAAAAGNGAAGCTG
GGGAGTAGGTGGGGGTTAGTGGAANGCAGGGGGAAGGTGGCAACGAGATG
GGGGGGAATTTCANNAAGGGGAAATGGAGNNGACAGGGGAATAAGAAATT
TGAAATGGTAANNATAAAGAAAAAATATCTAACNNATAAAAGTCCCATTA
ATCATATTTTAGCTCAAAGANNNACGGTATCTTACCTACTTTGTGGTGAG
AGATGTGTTTTGTGTGCCCCATCAAANNATATACATATCCCTCAGTANAA
AGAAACATGAAATGGTGTTATATATNAACATTTATATGAACCTAGGATAA
NNNNNNNNTTTTTAGTTTCCTNTCCCCGCCCCCCAACCCCCCAAAACTAN
NCTCAATCCCTGGGNATTTCCCAAAGATAAAAGAAAACCTTTCTAACCTC
TAAAGGGAGGTATNNNNNNNNNNATTTTTGCCCCAAGAAGAGGTCCCTCG
AGCGGGGGGCTGGGGGTGGGGTGNNNNNNAAAAAANACCAAAAGGAGGAA
AATTTNNGAAAGGGGGGGTCTGCCCAAAGTTTTTTTTGACCTGCGGGGGG
GGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNCACTTN
NNNNTTTNNNNNNNNNNNNNNNNNNNNNAAGTTAACTTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_l23.b1 MSMg01no268_l23.b1 CHROMAT_FILE:
MSMg01no268_l23.b1 PHD_FILE: MSMg01no268_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:05 2005
         (322 letters)



>mm_chr6_26126478_26127199
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagggttgctttcacatattatagaaactttgggaggagcaggtagattcacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagggttgctttcacatattatagaaactttgggaggagcaggtagattcacat 264

                                                                       
Query: 65  agggtaaaactacatcagacctatagtcatgtagttttaaattttacctgttatgacaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggtaaaactacatcagacctatagtcatgtagttttaaattttacctgttatgacaat 324

                                                                       
Query: 125 gatacttttatgcttatctcatccaaactgagtggttagcatctattactagggtgagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatacttttatgcttatctcatccaaactgagtggttagcatctattactagggtgagct 384

                                                                       
Query: 185 aatatgagtgtacttccagagctaccatctagtgtgatgtcccaatgacgctaacatctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatatgagtgtacttccagagctaccatctagtgtgatgtcccaatgacgctaacatctg 444

                                                                       
Query: 245 atacctgccgaatggtagagtctgggaaatatttcctgagaatttgcaggaacatttggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atacctgccgaatggtagagtctgggaaatatttcctgagaatttgcaggaacatttggg 504

                             
Query: 305 tatgaaagtattgtttta 322
           ||||||| ||||||||||
Sbjct: 505 tatgaaaatattgtttta 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)