BAC Information

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BAC

Clone NameMSMg01-268M19
Chromosome6 (Build37)
Map Location 4,166,702 - 4,166,831
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667335, Samd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1
Downstream geneLOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268M19.T7 (MSMg01no268_m19.b1)MSMg01-268M19.TJ (MSMg01no268_m19.g1)
ACCAG409107AG409108
length745760
length of high quality
(start - end)
131 (439 - 569)---
definitionCHROMAT_FILE: MSMg01no268_m19.b1 PHD_FILE: MSMg01no268_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:09 2005CHROMAT_FILE: MSMg01no268_m19.g1 PHD_FILE: MSMg01no268_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATATTCGCTTTTCAAATTTGTTGTATAGATTTTTTGAGAAAAGA
TCTATAAAATCATCAAATGTTCAGAAAAATCTGTCTCTCAAAAGTATTTA
GCCAGAAACAACTTTCTGTCTCATTAGTTTGAGAGTTTAGCAGAAAATTG
TTCAAATCAGTGGATTCATAGGAAATGGGATAATCTTACGAATGATGTTA
GCAAGTTGAATTTTTTAAGAGAGATATTATAATTTCTTCATGAAGAATAA
TACTAGAATAATACAAGAATGATATCAGAAAGATTAAGTTGCTATCAGAT
AGGTACATGAAAAATTCTTTTTTGCGCCCCCCCACCACTAAATTATCATA
AATTGTTAATAAGATTTTCTCCCCACCGNTCAAAAAGGAAAATTCAATCC
GATATTTGTGATGAAGAAATTGCCTATAGGGGTTGTCCAAAAGAGCAGTA
TACTTGCAATAAGCAGATTTAAAGAGAAGTCTAAGAAACAAATAGATGAT
ATGAAATATAGAAGTAGGAAAAATTTTAGGTATTCTCTATAAATAGTAAC
TAATTTGTCTGCTACTTCACATTAAGGAACATTTTCTATGAATGAACATC
TTACCATAGTGGTGTGGCTAATGTTCCACCTTAACACTCAAATCCCTCAT
TCCTGTCCCCTATTCGCTCTTTCTCTTTTTACCCTCTCTTTTTTG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGAAACAGCCAGGCCTGGTAATA
ACACATTGCAGGAGTGAAGCATCATGACTGCTTACCTGTGGCTTGTGGTG
GTTCCCAGGCTACTCTCACTGTTGCTACTTTATTTCTGCTTTGCTGGAGT
CTAAATGTTCGTTCTATGGCCTTCAATGAATTGTAGATTGGAAGAGGAAT
ATTGTGGGATCTTCAGTCATTTTTAAAGCATTGACAAGTAACAATGTAAT
GTTAGTAGCGAAAAATGTTTATCATATACTAGCTCCTTATGATAACTGTC
AGTAAGAACTAGTATTTATTTTTTTATGCCCCCCCTCCCCCCGAAGTTAA
CCAAGCTTCAAGAGGTTTTTGCACCCCCACACTTAAACAAAATAAAATTC
TACTTCTTTGTCTTTATAAAGATATGTAATGTAAATATATTATCTACTCA
TCANTTTATGTATTACCTGCAAAACAGATATATTTATATCTAATACTTAT
CTTGAGCACTTTGGCCTTGGAGAAATACAATCTGCTTTCCCTATCCACCT
CTTTAACTGAAACCTTACAATTAACTCTTTGCGTTTCTAGGCCATATAAC
CTGTTTTACCCAGACGCTTTTTCCAATCCCTTACTCTTTCTAGATCCGCC
TTTCTTATCTTTTCTTACTACTTACCCTTTCCCTCGCATCTTCTCCCTTC
CCTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_m19.b1 MSMg01no268_m19.b1 CHROMAT_FILE:
MSMg01no268_m19.b1 PHD_FILE: MSMg01no268_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:09 2005
         (131 letters)



>mm_chr6_4166501_4167031
          Length = 531

 Score =  228 bits (118), Expect = 8e-65
 Identities = 127/130 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaattcaatccgatatttgtgatgaagaaattgcctataggggttgtccaaaagagcagt 61
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaattcaatccaatatttgtgatgaagaaattgcctataggggttgtccaaaagagcagt 272

                                                                       
Query: 62  atacttgcaataagcagatttaaagagaagtctaagaaacaaatagatgatatgaaatat 121
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 271 atacttgcaataagcatatttaaagagaagtataagaaacaaatagatgatatgaaatat 212

                     
Query: 122 agaagtagga 131
           ||||||||||
Sbjct: 211 agaagtagga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)