BAC Information

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BAC

Clone NameMSMg01-268P20
Chromosome6 (Build37)
Map Location 45,562,978 - 45,563,269
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268P20.T7 (MSMg01no268_p20.b1)MSMg01-268P20.TJ (MSMg01no268_p20.g1)
ACCAG409244AG409245
length739744
length of high quality
(start - end)
663 (77 - 739)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no268_p20.b1 PHD_FILE: MSMg01no268_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:21 2005CHROMAT_FILE: MSMg01no268_p20.g1 PHD_FILE: MSMg01no268_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGACTCCGCGG
AATTCTTTTGTGATTGCCATACACACTAAGGATGATATCCTCCAAAAACA
TTCATTTTCCAAGAATTTCATAAATTCATTGCTTTTAATAGCTAAATATT
ACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCTTCTGTTGAG
GGACATCTGGGTTCTTTCCGGCTTCAGGCTATTATAAATAAGGCTGCTAT
GAACATAGTGGAGCATGTGTTCTTATTACCAGTTGGAACTTTTTCTGGGT
ATATGCCAAGGGGAGGTATTTCTATATCTTCTGGTAGTACTATGTCCATT
TTTGTGAAGAATCTCCAGACTGATTTCCAGAGTGCTTGTACAAGCTTGCA
ATTCCACCAGCAATGGAGGAGTGTTCATCTTTCTCCACATACTCGCCAGC
ATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGG
TGAAATTTCAAGGTTGTTTTGATTTGCATTTCCCTAATGATTAAGGATGT
TGAACATTTTTTCAGGTGATTGTCAGCCATTCAGTATTCCTCAGTTGAGA
ATTCTTTGTTTAGCTTTATACCCCATTTTTAATGGGTTATTTGAATTTCT
GGAGTCCAGACTCTTGAGCTCTTTGTATATATTGAATATTAGTCTCCTAT
CAGATTTAGGATTGGTAAAAATCCTTTCCCAATCGGTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGAACAGCTATTATGGAGGATAG
TGTAATGACACCACCAATAATTAGGACTTTTCATTTTCAGTTTCTCTGCT
AAGCTTGAATTTATTAAATAAATAAATTTAAGTTTACTTTGATGGTGAAC
ACTGAATAAATTTGTGGAGTTTTGTGAAGTTGCCTTTTCTTCCATGATTT
ACTGCCTGCTTCTTTTGCAGTCATTGGTTCTTTTTAATTGTTTTTCTATA
GTCCAAATAAATGTTACTTAGTATAATTTAATACTAGTACAATTTAGAAA
TAACACCCAGGTATACTGTTTAGAGTTGCCTACGCATAATTTACCATTAC
CTTTCTTTATTCATTTAGAAGTATTATTCCTTAGTTTGCCTCAAATTCCT
GACTACCATTGAGTTCATTCTCCATCTTCATGACTTATGGGAAAATGGAT
GAGGTCATTAATCAGATGATGAAGTTCACATAGACAACTTATGGAAAAAT
GTCAAGGTTACAAAAATAATTTGGGTTCTTCAAAGCTAGACCAAATTGTA
ATACCCGTCGATGAAAAGTTTTAAGTAGACATGAAGCTGCTAAGTCAACT
CTTTAGAAAGATTAGTGTGGGGTCACCCTAGGGACAGACTGAAGATAAGT
GAATTAGCAGTCAACAAGGAAATCAGAAGGCTGCACATGGCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_p20.g1 MSMg01no268_p20.g1 CHROMAT_FILE:
MSMg01no268_p20.g1 PHD_FILE: MSMg01no268_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:21 2005
         (292 letters)



>mm_chr6_45562778_45563469
          Length = 692

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaacagctattatggaggatagtgtaatgacaccaccaataattaggacttttcatt 60
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaacagctattatggaatatagtgtaatgacaccaccaataattaggacttttcatt 260

                                                                       
Query: 61  ttcagtttctctgctaagcttgaatttattaaataaataaatttaagtttactttgatgg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagcttctctgctaagcttgaatttattaaataaataaatttaagtttactttgatgg 320

                                                                       
Query: 121 tgaacactgaataaatttgtggagttttgtgaagttgccttttcttccatgatttactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tgaacactgaataaatttgtggagttttgtgaagttgccttttcttccatggtttactgc 380

                                                                       
Query: 181 ctgcttcttttgcagtcattggttctttttaattgtttttctatagtccaaataaatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcttcttttgcagtcattggttctttttaattgtttttctatagtccaaataaatgtt 440

                                                               
Query: 241 acttagtataatttaatactagtacaatttagaaataacacccaggtatact 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttagtataatttaatactagtacaatttagaaataacacccaggtatact 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)