Query= MSMg01no269_b21.b1 MSMg01no269_b21.b1 CHROMAT_FILE:
MSMg01no269_b21.b1 PHD_FILE: MSMg01no269_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:30 2005
(655 letters)
>mm_chr6_78633843_78634897
Length = 1055
Score = 1096 bits (567), Expect = 0.0
Identities = 642/693 (92%), Gaps = 41/693 (5%)
Strand = Plus / Plus
Query: 4 ggaattctagagttgtcacgatgcagagagatgagtccctggagtcttctgtatctcaga 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggaattctagagttggcaagatgcagagagatgagtccctggagtcttctgtatctcaga 249
Query: 64 aaacaaggtggatggctcctaaggcatgatatcttaggttgacacctgccctccaacaac 123
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 250 aaacaaggtggatggctcctaaggcatgatatcttaagttgacatctgccctccaacaac 309
Query: 124 atctacacacatgtaccagcatccacacacactcacaacatgcatatgca---------- 173
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atctacacacatgtaccagcatccacacacactcacaacatgcatatgcaagcctgcata 369
Query: 174 ----cacaaatataaaaggaaaataagactcaccaggaagtggagggactgatctccttt 229
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 370 tgcacacaaatataaaaggaaaataagactcaccagaaagtggagggactgatctccttt 429
Query: 230 tgacacagttggctagaagttattagagagagaatacagaccaagtccagaaatttcact 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgacacagttggctagaagttattagagagagaatacagaccaagtccagaaatttcact 489
Query: 290 tcaggaggcaggaacattttgaaagggtgatatattaatggcactgacaacctgttgtct 349
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 490 tcaggaggcaggaacattttgaaagggtgatataggaatggcactgacaacctgttgtct 549
Query: 350 tgaatctgtccttctaaggaagagctaaattcaccttcatcacaaaaaaactgtggtcag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgaatctgtccttctaaggaagagctaaattcaccttcatcacaaaaaaactgtggtcag 609
Query: 410 aaagaaggttttccaaggtttagtttacatgacaggaatgtcaggggatttgggtaagtc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaagaaggttttccaaggtttagtttacatgacaggaatgtcaggggatttgggtaagtc 669
Query: 470 tagaatcttctccttcctgtcaacttgcctttagtgcattgcttccattttcagaactac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tagaatcttctccttcctgtcaacttgcctttagtgcattgcttccattttcagaactac 729
Query: 530 aagaggtctgaagccctccagttacaaagctt---------------------------g 562
|||||||||||||||||||||||||||||||| |
Sbjct: 730 aagaggtctgaagccctccagttacaaagcttacatcctgagaagaaaggaagagacctg 789
Query: 563 aggcagctaggaagctctcatggctgtatcaactctcttaaggacaatccccagaacctc 622
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aggcagcaaggaagctcttgtggctgtatcaactctcttaaggacaatccccagaacctc 849
Query: 623 caactgggaatttctcttgatatgcagcctata 655
|||||||||||||||||||||||||||||||||
Sbjct: 850 caactgggaatttctcttgatatgcagcctata 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_b21.g1 MSMg01no269_b21.g1 CHROMAT_FILE:
MSMg01no269_b21.g1 PHD_FILE: MSMg01no269_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:30 2005
(290 letters)
>mm_chr6_78762417_78763106
Length = 690
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%), Gaps = 1/288 (0%)
Strand = Plus / Minus
Query: 1 caaagtggacatgcattgttggctatggtagaggcctgagaattctttacttccatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 caaagtggacatgcattgttggctatggtagaggcctgagaattctttacttccatgaag 592
Query: 61 agaaattccatgaacattctgggcaggttcttatgaagaggcaaaaggttaaacctggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agaaattccatgaacattctgggcaggttcttatgaagaggcaaaaggttaaacctggcc 532
Query: 121 acagaaattgtgactgaactcagaggta-ggggaggtagaggtcataggccaatggagca 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 531 acagaaattgtgactgaactcagaggtagggggaggtagaggtcataggccaatggagca 472
Query: 180 ttagcctgagagctggagacaggggccataggtcctacaaatctcaggatgagatttgtc 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 471 ttagcctgagagctggagacaggggccataggttctacaaatctcaggatgagatttgtc 412
Query: 240 aggatttgggagtgtttaaatctcactcttgctcctggccagcttcct 287
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aggatttgggagtgtttaaatctcactcttgctcctggccagcttcct 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
