BAC Information

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BAC

Clone NameMSMg01-269D06
Chromosome6 (Build37)
Map Location 53,906,867 - 53,907,185
singlet/doubletsinglet
Overlap geneCpvl
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik
Downstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269D06.T7 (MSMg01no269_d06.b1)MSMg01-269D06.TJ (MSMg01no269_d06.g1)
ACCAG409396AG409397
length729732
length of high quality
(start - end)		323 (42 - 364)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no269_d06.b1 PHD_FILE: MSMg01no269_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:36 2005CHROMAT_FILE: MSMg01no269_d06.g1 PHD_FILE: MSMg01no269_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATCCTACCTACCACCAATTAGCAGAAGTTCCTTATTTCAGTGGCCCCC
ATGTTTGCAGTGAGGTTTTCTTCGTCATGTCCTTGTGCATTTCTCCTCTT
TCCTTGGAGAAGGGCCTCACCTCACAAGTGAGATCTGGATATGTCATGGA
TTATCTATAAGAATGTTATGCCGTTCGTGTGGGCCATAGCAAGTATTGTC
TATCCTGGTTATGATGTCATGATTCGTCACACAAGCATGACGTGCTATGG
CTGACTCTCGGGTACATAGCATTAAATAGCACCTTCATATCGCAGCACCT
GGTTCAGGTATGGCATCAGTGCATACGCTGCTCAACTCATTGAAGGAGAA
AGACACATGGTAGGCCCCGGGTTCTCTTTAAAACCAGGTGCTTCAAGGGC
CGCTGAGCACCAAGGAGGCAGGTCAGCTGAGGTTGGAAGTCTGCTAGCAT
CCCAGGAATGCAGGGTGCCGTGCTTCACGGCCTCATGAGAACCCTGTTTG
GCACATTGCTGTTTGACTTGTCCTGTAGTGTGGCCTCTTAGGACCAGGCT
ATTTTTCTGAGTGTCTAGAGATAACCTTAACCCTGCCAGGTCACATGAAG
GTGGGGGAGAAGAGAGTATTGGAGATTATTTGCCATTTGATTTGAAATAA
CTCTGCTTCTTATCTTTCTTTAGATCTTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGATGGATAGGCAAGGTGACCTCCAA
GCCCCACCCCTTCATCAGGAACATCCATCAGCTGACAGATGCTGGGGGAG
AAAAAACATTCTCTTCGGAAGATGAGGCCACTGGTGGGTTTCCCATGCAC
TTTACTTTATAAAAAGTAATCTCCTTTAAAAAGTGTATTAAACATAGTTT
CTCCCCAACCAAAGTTATTTGTGAATTCGGGGTGTGTATGTTTACCTAAG
GGATTAGAAAGGACATCTTCAAAGAATTAGGTCTTCTTATCTATTGCCAA
CAGTGAGGCAGACTATCTTTTGTTTAAGCCCCTGGCCACTCACAGAAGTT
CTAGCTTGCGCATGTCAGGCACGAATGGGTACTTCCAAAGGTGCCCTTAA
ACCCAGTGGGGGGAGTCCATTGCATTTCATTCAACTAGGATCATCTCCAC
ATATTTTGTAGATGAATATATTAAAAAAAACACTTTTTATCTAAGCATAG
AGTAGACTTTCTGATGATTATTTGTGAATCCTGCACCATTAAAAATTCAA
AGAAAAAGGGAGGCAGGCGTGGTAGTAAAAAGATCTCTAAAATCCTAGCA
TTCGAAAGGCTGCGGCAAGACAATTTTGAGTCCAAGGAAACATAGTGAGA
CTCTATATGAAAAACAAAGGGCTAAGATACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_d06.b1 MSMg01no269_d06.b1 CHROMAT_FILE:
MSMg01no269_d06.b1 PHD_FILE: MSMg01no269_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:36 2005
         (323 letters)



>mm_chr6_53906663_53907385
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcctacctaccaccaattagcagaagttccttatttcagtggcccccatgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattccatcctacctaccaccaattagcagaagttccttatttcagtggcccccatgtt 464

                                                                       
Query: 65  tgcagtgaggttttcttcgtcatgtccttgtgcatttctcctctttccttggagaagggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgcagtgaggttttcttcgtcatgtccttgtgcatttctcctctttccttggagaagggc 404

                                                                       
Query: 125 ctcacctcacaagtgagatctggatatgtcatggattatctataagaatgttatgccgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctcacctcacaagtgagatctggatatgtcatggattatctataagaatgttatgccgtt 344

                                                                       
Query: 185 cgtgtgggccatagcaagtattgtctatcctggttatgatgtcatgattcgtcacacaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cgtgtgggccatagcaagtattgtctatcctggttatgatgtcatgattcgtcacacaag 284

                                                                       
Query: 245 catgacgtgctatggctgactctcgggtacatagcattaaatagcaccttcatatcgcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 catgacgtgctatggctgactctcgggtacatagcattaaatagcaccttcatatcgcag 224

                              
Query: 305 cacctggttcaggtatggc 323
           |||||||||||||||||||
Sbjct: 223 cacctggttcaggtatggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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