BAC Information

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BAC

Clone NameMSMg01-269F22
Chromosome6 (Build37)
Map Location 20,297,188 - 20,297,482
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040838, Kcnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269F22.T7 (MSMg01no269_f22.b1)MSMg01-269F22.TJ (MSMg01no269_f22.g1)
ACCAG409501AG409502
length743743
length of high quality
(start - end)		323 (41 - 363)296 (72 - 367)
definitionCHROMAT_FILE: MSMg01no269_f22.b1 PHD_FILE: MSMg01no269_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:49 2005CHROMAT_FILE: MSMg01no269_f22.g1 PHD_FILE: MSMg01no269_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGTTTAGCTCTGAACCTCATTTCTTAATTGGCTTATTTGTTTTTTTTT
AAATCCAATTTCTTGTGTTCTTCATATATTTTGGGTATTAGCCTTCAATG
GGATATAGGGTTAGTGAAGATTTTTTTCCCATTCTGTAGGTTGCAATTTT
GTCATATTGACAGTGTCCTTTGCCTTACAGAAGCTTTTCAGTTTCATGAA
GTCCCATATTATTATTAATCTCCTTATTCTATGTAATAGACTTAAAAGCA
CACTTCTCCATTCTAACTGAAATTCTGACCATTGTTCAATATTTATATCT
CTATTATCTCCTTGTTTCTGACCACCCCTGCCTATACCTCAGCACATACA
CTGAACAGTGTTTTACATTCCACATATATGTCTTCCTGGGTTTACTTTTG
TCAGTTTGTGTTATGTCCTCTTTACCTACTTCAACTCTTGTGCAAACTGT
TTCATAGAGGAAACTGAGTACAAAAAGGATAAAGATTCATAACTCAAGTT
GCTTTTAGCAAAGAACTTGTACTACCTCTATGAATGCAACAGAGAACCTA
CAAGTCTCTTGCCATTCTCTTAAGATGCTTCCTCATCTTCAAAGTGATCT
TGCTCAAATCCATGCCATTAAATATATTCAATATTTTAGAGATTAAAATA
AAAAAGCCTTGCACTTTTAGCAACATATGTGAGAGCGTTATTG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTACTCTTACCTTAATTTCCAAGTTTG
CTATTTTTTATGGATTTAATTAATTGGGAAAAGTCTAAAAATATGTGCAG
GGGACTGGAGAGTTATAGACAAGTTTTTGATGTAACATATGTCACATGTA
TAAACATATAATAGTTTGAAAGTTTTATTTATTTGACTGTTTATTTTTTA
ACATGGAAAGATGAAGAAATTAGGATGATTTGGTCAATTGGTCTTAAGTT
GTTATACTTAAAGTTGATAACTTGTGGTGATCTATTTCATAGTAATATAA
CTATAAATATGATAATGTATGGTGCATTTTAAATAGATGAAAGTAAAGAT
GTTAATGTTTTTACCCTAAAGAAATAAAAAGTGTTTCAGGGGTATTTAAT
ATGATATATATACATATATATATATATATATATATATAGCACATGGGCAC
TCATCATAAATTCTGTATGAACTGTAGGTTTTACATACCAGTTAAAAGTA
AGTGCAATAGCCAGGCAGTCGTGGTGCACGCCTTTAATCCCAGCACTTGG
GAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
GTGAGTTCCAGAACAGCCATGGCTTCACAGAGAAACCCTGTCTCAAAAAA
AAAAAGTGCAATAATAATGAAGACACTATTATTTTCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_f22.g1 MSMg01no269_f22.g1 CHROMAT_FILE:
MSMg01no269_f22.g1 PHD_FILE: MSMg01no269_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:49 2005
         (296 letters)



>mm_chr6_20296988_20297682
          Length = 695

 Score =  557 bits (288), Expect = e-163
 Identities = 294/296 (99%), Gaps = 1/296 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattactcttaccttaatttccaagtttgctattttttatggatttaattaattgggaaa 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cattactcttaccttaatttccaagtttgctattttt-atggatttaattaattgggaaa 259

                                                                       
Query: 61  agtctaaaaatatgtgcaggggactggagagttatagacaagtttttgatgtaacatatg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 agtctaaaaatatgtgcaggggattggagagttatagacaagtttttgatgtaacatatg 319

                                                                       
Query: 121 tcacatgtataaacatataatagtttgaaagttttatttatttgactgtttattttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcacatgtataaacatataatagtttgaaagttttatttatttgactgtttattttttaa 379

                                                                       
Query: 181 catggaaagatgaagaaattaggatgatttggtcaattggtcttaagttgttatacttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catggaaagatgaagaaattaggatgatttggtcaattggtcttaagttgttatacttaa 439

                                                                   
Query: 241 agttgataacttgtggtgatctatttcatagtaatataactataaatatgataatg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agttgataacttgtggtgatctatttcatagtaatataactataaatatgataatg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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