BAC Information

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BAC

Clone NameMSMg01-269I01
Chromosome6 (Build37)
Map Location 94,953,426 - 94,953,713
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276
Downstream geneLOC100043680, Kbtbd8, LOC435912, Suclg2, LOC665886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269I01.T7 (MSMg01no269_i01.b1)MSMg01-269I01.TJ (MSMg01no269_i01.g1)
ACCAG409600AG409601
length730733
length of high quality
(start - end)		536 (44 - 579)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no269_i01.b1 PHD_FILE: MSMg01no269_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:59 2005CHROMAT_FILE: MSMg01no269_i01.g1 PHD_FILE: MSMg01no269_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTCTTCGCTCATATGAGTCTTTGTTTTTTTCTTCTTGTTTTTCTC
TTAGTTTCTGTTTTCAATTTCATTACCTTGTACCCTTTGTCATTTCCTTT
TTTTCTTTGCTTTGGATTTATCTTGCTTCATTAAAATTGAAGCTCACTTT
ATTAATTGGAGACCATTTTTCTTGCTTTTGTTGTGTCCCATGAACTTTTT
TATGCCTTCTTTCTAATTTTTCTTTTAGCTAAAGTTATTTTCTAGCTTCC
TGTCTGACTTCCTGTCCACCTGTGTCTTACTAAAGCAGACTGTTTAATTC
CCAAGTGCTGATAGACCTTGTCTCCTTGTCTCCTTTCTAGTTTAGTATGG
TCCCTGGCTAAGAACATACTTCCCACTGTGACTCTTTCACACTTGTTATT
GTTTGACTTATGACCTGGGACATAGTCTGTCTTGGTGAATATTCCATGTG
CACTTGAAAGGGATTCGTACTTTCATGTACCTGATGGAATGTCTTAGAAA
AATCAATTAGATCCAGTCGGTGGATGGTGGTGTTGAGTTCTTCTACACAT
AGGCTGAGCTTTCTGTTTAGCTGACCTACTTATAACTGAGGGAGGCCTGC
TGAAGACTTTAACCACAGTTCTGAATTTTTCCATTTTTCGTCACAATTTG
CGCAGTGTTCGTTCATGCATTCTGATTACT

TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCTGTGGATGCAATAAATCATTCAT
CTGTGGTGCTGGTTGCATGCCTACTCCTCCCTGTCCCTTGACCTTGGCTG
CACAAACTTGAACTTGGTCACTAACTGCAGTGGCACATTATAGAGACAGA
AGTCTCGCCAGCATCAGTTTTTCAGGACATGCTCCCTTCACCCGGAGTGA
ATCAGATGCTGGCAAGTCGGCCTTTAAAGGCTTGGATGTCCAAACAGAAC
TTTGTGGAGCAGGTGCGCTCGGAACATTTTACATTTTCAAAATTCTACTG
TTTCATCAGAAACTGGATTAGTCTCTTGCTATGACTCAGATCCCAAAGAT
GACAGCTTCTCTCCCTGCTACTTCTCTCAAGTTAGACAAAAGCCAGCCAC
AAATATTCTCAGAAGCTCAGAGAAAAGGAGTTAGCCAGGAGAAGCAGCCA
GTGATGGGGTTAAGAACGAAGATTGTTAGAGATTGCCCTGGCTTGTAACC
CTGAATGGTCTAGATTGTCTGCTGATGTTTGGGGAAGCAATTGAAGCTCT
GTGAGATTCTTTTTATTTAAACCCAGTGAGGAACTCATGACTGGGCCCTT
GGTGAGGGACTAAAGCCTTTTTTCCGGAGACTCAAAGGGCAACAATGTAT
CACTGCCTAGTGGACATGTTACATTGTTTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_i01.g1 MSMg01no269_i01.g1 CHROMAT_FILE:
MSMg01no269_i01.g1 PHD_FILE: MSMg01no269_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:59 2005
         (287 letters)



>mm_chr6_94953226_94953913
          Length = 688

 Score =  495 bits (256), Expect = e-144
 Identities = 280/288 (97%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctgtggatgcaataaatcattcatctgtggtgctggttgcatgcctactcctccct 60
           |||| |||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 488 tcttttgtgaatgcaataaatcattcctctgtagtgctggttgcatgactactcctccct 429

                                                                       
Query: 61  gtcccttgaccttggctgcacaaacttgaacttggtcactaactgcagtggcacattata 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 428 gtcccttgaccttggctgcacaaacttgaacttggtcactaaccgcagtggcacattata 369

                                                                       
Query: 121 gagacagaagtctc-gccagcatcagtttttcaggacatgctcccttcacccggagtgaa 179
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gagacagaagtctcggtcagcatcagtttttcaggacatgctcccttcacccggagtgaa 309

                                                                       
Query: 180 tcagatgctggcaagtcggcctttaaaggcttggatgtccaaacagaactttgtggagca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcagatgctggcaagtcggcctttaaaggcttggatgtccaaacagaactttgtggagca 249

                                                           
Query: 240 ggtgcgctcggaacattttacattttcaaaattctactgtttcatcag 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggtgcgctcggaacattttacattttcaaaattctactgtttcatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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