BAC Information

Click to search

BAC

Clone NameMSMg01-269L08
Chromosome6 (Build37)
Map Location 108,552,802 - 108,553,116
singlet/doubletsinglet
Overlap genenone
Upstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
Downstream geneBhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269L08.T7 (MSMg01no269_l08.b1)MSMg01-269L08.TJ (MSMg01no269_l08.g1)
ACCAG409753AG409754
length734775
length of high quality
(start - end)
324 (41 - 364)167 (69 - 235)
definitionCHROMAT_FILE: MSMg01no269_l08.b1 PHD_FILE: MSMg01no269_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:13 2005CHROMAT_FILE: MSMg01no269_l08.g1 PHD_FILE: MSMg01no269_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGACCTTGAATGAAGCCGTGGTGCTGCAGGATTGACCAGGTCCTGGAACT
TTCTGCTACTTGTAAACAAGAAAAAAAAATTGTTTCAAATCTAACTCAAC
ATTCATTTTGAGAATAAAATTTTATTAGGATGCTTGTCTATGCACTGATT
ATGGCTATTTTCATGTTATATAACAGGGTCAAATGATGAAAATGAGATGC
TACATGGCGTCCAAACCTACCATCTTTCCTAGTTCTTTCTCTATATGATA
TGGGTGATTCCCTGCATTTATTCATGCGTGAGACTCCACATTTATACATA
ATAAACTCTATACTTGTTACCTCCCGCATGCATGCTTTTGCATCATTGAA
GGGCAACATTTTACCACATATATTTAAAATGCATGATGTTCTCTTCCTCT
TTTATGATTGTTTTCATGTATATGGGTGTTTTGTCTGCATGTGTGTCTAT
ACACCACATGCATGCCTGGCCAAGAGATGCTAGACGAAGGCATCAGATCT
GCTGAGACTGGAGTCACAGATGGTTGTAAGCTGCCATGTGTGTGCTAAGA
ATGAGACTCTGGTCTTTTGGAAGAGTGGTCTTAACCACTGAGCCATCTCC
TCAGCCCTACATGCCACCAGTTTTACATAAATCCTTCTATGTTTCATGTG
GTCCTCAGACTTCTTCATTATTACATTAACTTGG
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGTCTTGTTACTCCATGTGTCCTGGAACAC
AAACACCAAAGTATTTCTCCGAAGAATAACACACTAAGAAAAACAAAGAG
GAGGCTGCAGAATATGCTAAACTTTTGGCCAAGAGAAAGAAAGAAGAGCC
AAGACAAAGCTCCTAGAACAGATTGCCAAGGGATGTAGGCTGAANTTGCT
GAGAGCTCCGACTTCTGAGTCCAGTCAAAAATAANCCTTTGAAGAGTAAC
AAATAAATACCCATTTCTTGGTGTAGNGAAAAATTGCAAAAGATAATATT
TATTAAATTTCTTTAATTCGCCCCCCGGCCGNNNNTATTTGGCTTAAGGG
AATCTAAAACCCCCCCACACAAAAAAAAAAAGANTTGGCCCTTTTTAAAA
ACAAAGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGCGGGGGGGGGC
NNCTAAAANACCCCCCCCCCCCNAATATTTTGTGCCAAAAAACGGGGGGG
GGGGGGGGGGGGGNNCNNNNNNNNNNNNNCTAGATATTGAATCTNNNNNN
TNTTNTTGGNNNNCCCCTTTTTTTCCCCACCAAAAAAGGGAGGGGAAAAC
AAAAAANNNNNNNTTNTNNNNTNNNTTGGTGGGGAAATACAGCGGAAGAA
AAATAATANATTTTATATNNNNNNNNNNNTCCCCCCCCCCATAAATTTCT
ATTAAAAAAAATATGGAGAGAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_l08.b1 MSMg01no269_l08.b1 CHROMAT_FILE:
MSMg01no269_l08.b1 PHD_FILE: MSMg01no269_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:13 2005
         (324 letters)



>mm_chr6_108552598_108553320
          Length = 723

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaccttgaatgaagccgtggtgctgcaggattgaccaggtcctggaactttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaccttgaatgaagccgtggtgctgcaggattgaccaggtcctggaactttct 264

                                                                       
Query: 65  gctacttgtaaacaagaaaaaaaaattgtttcaaatctaactcaacattcattttgagaa 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 gctacttgtaaacaagaaaaaaaa-ttgtttcaaatctaactcaacattcattttgagaa 323

                                                                       
Query: 125 taaaattttattaggatgcttgtctatgcactgattatggctattttcatgttatataac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaattttattaggatgcttgtctatgcactgattatggctattttcatgttatataac 383

                                                                       
Query: 185 agggtcaaatgatgaaaatgagatgctacatggcgtccaaacctaccatctttcctagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggtcaaatgatgaaaatgagatgctacatggcgtccaaacctaccatctttcctagtt 443

                                                                       
Query: 245 ctttctctatatgatatgggtgattccctgcatttattcatgcgtgagactccacattta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 ctttctctatatgatatgggtgattccctgcatttattcatgcgtgagaatccacattta 503

                           
Query: 305 tacataataaactcta 320
           ||||||||||||||||
Sbjct: 504 tacataataaactcta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space:   224910
Effective search space used:   224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)