BAC Information

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BAC

Clone NameMSMg01-269M02
Chromosome6 (Build37)
Map Location 29,524,352 - 29,524,681
singlet/doubletsinglet
Overlap geneTnpo3
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5
Downstream geneTspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269M02.T7 (MSMg01no269_m02.b1)MSMg01-269M02.TJ (MSMg01no269_m02.g1)
ACCAG409785AG409786
length730795
length of high quality
(start - end)		658 (40 - 697)---
definitionCHROMAT_FILE: MSMg01no269_m02.b1 PHD_FILE: MSMg01no269_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:17 2005CHROMAT_FILE: MSMg01no269_m02.g1 PHD_FILE: MSMg01no269_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GTACTGTTTGCTTGGGCCTTCTTGTTTTTGTGTAGTGCCAGGGCCAAAAC
TTAGACCCTGAGGATGCTAAACCAGTGCTCACCTGAGTGCATCCCAGACC
CTTGGTGGTTTGCTTGGTTTTTTGTTTCTCTTTGTGTTGAGACAGGGTCC
ACTGTGTAGTGCTGGCTGGCCTAGAATTTACTATTTTGATCAGGCTGGCC
TCAGGCTCAAGAAATACACCTACCTCTGCCTGCTACACACTGGGGTTAAA
GGCATGTGCCACCACACCTGGCTTTATCTGTCTGTTTGTTTTTGAGACAG
TGATTTGATATGTAGTTGAGGCCAATTTTGAACTCCAGCCTCCTGATTGC
TGGGCTTACATACAGGTATGCACCACCACATCGGTTTCTATGTTCTACTT
TGTTTTTAATAGTGTAGGATACATGGTTAGGTTAAAAACTAAGATTGGGG
GCTGGTGAGATGGCTCAGCAGGTAAGAGCACCTGACTGCTCTTCCAAAGG
TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAA
TGAGATCTGACTCCCTCTTCTGGTATGCCTGAAGACAGCTACAGTGTACT
TACATATAATAAATAAATAAATCTTANNAAGCAAAACAAAAAAACTAAGA
TTGAAAAATGAAAAACCACGTGTAAAGATG

TGATGTGAGCTNNCCTGTCGTTCTCCTGTCCTTCTACTTTAGTTGTCCTA
TTTACTATCCGCGGATTCACTGCCCCCCCTTTCTCATCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTCCCAAAGACTAAGGGGGTAAGGGTCCCGGG
GCGGCCCCCCCCGGGTGCCCCCCCCACCATTTTTTTTTCTGGGCGGCTCC
TTTTTCTAAATGGGTTTCCGCGCCCGGGGAATAATTTTGTTTTTTCTCTT
GCGGAAAAAATATCGCGTCCCTTTTTTGGGGCGGGGGGGGGTCCCCCTCC
CCCCCCCCAAAAACCTAGGCCGGGGCTCCCCCCCCCCCCCCCCCAAATAG
GGTCCTTGTAAAACCCCTTTTTCTCCCAGCCTCCCCTTTCGGGGGGGCTG
GTGACAATTTGTCTTTAGCTCCCCCCCCCCCCCACCTCGTGACCTGTTAT
TAAAACGCGGGCAAAAATTTTGGGGGCCATCGGGGGCCCCCCTTCATAGG
GGGTTTGTGACAGCCTCCTTTTTCGCTATTGCTTTTCGTGGTGCTTCTTT
CTCCCCACCTCTCCCCCACTATATTGGCCCGTGAAGGTTTTTCCCTCTCT
TTCTTTACCATCTTGGTACCNTTTCTTTCATTCTTGCCCATGCTATGATA
CTTTCTTTTTCCTGCTGCGAGTCCGTTTTTTGTGGTGTGTTCTGGTTCTT
ATATTATCCCCCTCTTTTTCCCTGGGCATTTCCCTAGGTCACCCCCTTTT
CCCCCTTCCCTCCTCCCTTTTCTCCTTCCTTTTTTCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_m02.b1 MSMg01no269_m02.b1 CHROMAT_FILE:
MSMg01no269_m02.b1 PHD_FILE: MSMg01no269_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:17 2005
         (658 letters)



>mm_chr6_29524352_29525409
          Length = 1058

 Score =  630 bits (326), Expect = 0.0
 Identities = 329/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtactgtttgcttgggccttcttgtttttgtgtagtgccagggccaaaactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggaattctgtactgtttgcttgggccttcttgtttttgtgtagtgccagggccaaaactt 271

                                                                       
Query: 64  agaccctgaggatgctaaaccagtgctcacctgagtgcatcccagacccttggtggtttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agaccctgaggatgctaaaccagtgctcacctgagtgcatcccagacccttggtggtttg 211

                                                                       
Query: 124 cttggttttttgtttctctttgtgttgagacagggtccactgtgtagtgctggctggcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cttggttttttgtttctctttgtgttgagacagggtccactgtgtagtgctggctggcct 151

                                                                       
Query: 184 agaatttactattttgatcaggctggcctcaggctcaagaaatacacctacctctgcctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 agaatttactattttgatcaggctggcctcaggctcaagaaatacacctacctctgcctg 91

                                                                       
Query: 244 ctacacactggggttaaaggcatgtgccaccacacctggctttatctgtctgtttgtttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 90  ctacacactggggttaaaggcatgtgccaccacacctggctttatctgtttgtttgtttt 31

                                         
Query: 304 tgagacagtgatttgatatgtagttgaggc 333
           ||||||||||||||||||||||||||||||
Sbjct: 30  tgagacagtgatttgatatgtagttgaggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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