BAC Information

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BAC

Clone NameMSMg01-270B19
Chromosome6 (Build37)
Map Location 64,637,750 - 64,638,045
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270B19.T7 (MSMg01no270_b19.b1)MSMg01-270B19.TJ (MSMg01no270_b19.g1)
ACCAG410042AG410043
length734759
length of high quality
(start - end)
298 (437 - 734)595 (69 - 663)
definitionCHROMAT_FILE: MSMg01no270_b19.b1 PHD_FILE: MSMg01no270_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:42 2005CHROMAT_FILE: MSMg01no270_b19.g1 PHD_FILE: MSMg01no270_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATCAGGGCTGGATCCTGGAGGCAGGAGCTGATGCAGAAGCCATGGAGAA
TTGCTGCTTATTGCTGGCTCTCCTTCCCATGGCTTACTCTTTCTGCTTTC
TTATAGAACCCAGGACCACCAGCCCAGGGATGGCACCACCCACACTGTGT
CAAGTTGACATACAAAACCAGCCAGTACACACAGTAAATGAATAAATACC
ACGTGCGTCTCCTGGACTTAAACAGTGAACACAGACCTTTTAAAAACCGC
TGCTCTTGGAGGAAGCCTGATTTCTCTTCTCCTAATTCCAGTTTGTTGGA
GATAGTTAGTTGNTTACNCGCNTNTCTGNGCACCCCACTTGATGACTCTC
GGTCTCTTCTCTCAATTATTTTTCAAAAAACAATATGAAGATGTTCTTAA
ATGCAGAGACTTGAGTGGTCCCTTCTCACATCCCACCATGCCAGTTACAC
ATTTCCCAGGAAAGAGACATCAACAGGATATCACTGAGTCTCATGATTTT
AGCATCTCAGCCATTAAAAAGGGGAAAAGCAAATATTGTTTGGTGTGTGA
CTGGTTTTGAGGACCCGCTTCTCCCTTTATATTATAGCTCTTCCTTTCAG
ACTTCATTGAAAAGGATAGATGTGGAAAAAGATGAAATGTCAAAAGGCCC
TTTGTCACTTAAGTAGTTATAATCCTAAACGAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGG
TGTTGGATCTTGTCACATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTCTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTC
TTATATTAAACCATCCCTGTATCCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATT
GAGGATTTTTGCATCGATATTCATAAGGGAAATTGATCTGAAGTTTTCTA
TCTTTGTTGGATCTTTCTGCGCCTTACGTATCAGAGTAATTGTGGCTTCA
TAGAATGAGTTGGGTAGAGTTCCCTCTACTTCTATTTTGTGGAATAGTTT
GTGAAGAACTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCAC
TAAACCCATCTGGTCCTGGGCTATTTTTGGCTGGGAGACTATTAATAACT
GCTTCTATTTCTTTAGGGGATATAGGACTGTTTAGATCATTAACTTGATC
CTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAATTTTTCCATTTTGT
CCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTTTANAAGGATCTGATG
GTGTTTTGCATTTCTTCAGGATATGCTCGTATGGCCCCCCCTTCCTTCAG
ATTCTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_b19.b1 MSMg01no270_b19.b1 CHROMAT_FILE:
MSMg01no270_b19.b1 PHD_FILE: MSMg01no270_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:42 2005
         (298 letters)



>mm_chr6_64637550_64638246
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 294/297 (98%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagatgttcttaaatgcagagacttgagtggtcccttctcacatcccaccatgccagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagatgttcttaaatgcagagacttgagtggtcccttctcacatcccaccatgccagtt 260

                                                                       
Query: 61  acacatttcccaggaaagagacatcaacaggatatcactgagtctcatgattttagcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacatttcccaggaaagagacatcaacaggatatcactgagtctcatgattttagcatc 320

                                                                       
Query: 121 tcagccattaaaaaggggaaaagcaaatattgtttggtgtgtgactggttttgaggaccc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagccat-aaaaaggggaaaagcaaatattgtttggtgtgtgactggttttgaggaccc 379

                                                                       
Query: 181 gcttctccctttatattatagctcttcctttcagacttcattgaaaaggatagatgtgga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 gcttctccctttatattatagctcttcctttcagacttcattgaaaaggaaagatgtgga 439

                                                                    
Query: 241 aaaagatgaaatgtcaaaaggccctttgtcacttaagtagttataatcctaaacgaa 297
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 aaaagatgaaatgtcaaaaggccgtttgtcacttaagtagttataatcctaaacgaa 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 697
Length adjustment: 9
Effective length of query: 289
Effective length of database: 688
Effective search space:   198832
Effective search space used:   198832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)