BAC Information

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BAC

Clone NameMSMg01-270B20
Chromosome6 (Build37)
Map Location 82,395,254 - 82,533,885
singlet/doubletdoublet
Overlap geneTacr1
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198
Downstream genePole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270B20.T7 (MSMg01no270_b20.b1)MSMg01-270B20.TJ (MSMg01no270_b20.g1)
ACCAG410044AG410045
length725755
length of high quality
(start - end)		685 (41 - 725)685 (68 - 752)
definitionCHROMAT_FILE: MSMg01no270_b20.b1 PHD_FILE: MSMg01no270_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:42 2005CHROMAT_FILE: MSMg01no270_b20.g1 PHD_FILE: MSMg01no270_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,533,367 - 82,533,885)(82,395,254 - 82,395,939)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCCATGAGATCCAGCTGTAAAGCATTTTCTCAATTAGTGATCAAGGGTA
AGAGGGCCCATTGTGGATAGTGCCATCCCTGGGCTGGTAGACCTGGGTTC
TATAAGAAAGCAAGCCAGGGGAAGCAATCCAGTAAGCAGCATCTCTCCAT
GGATTCTGCATTAGCTCCTGCCTCCAGGTTCTTGCCCTGTGTGTCTTCCT
GTCCTGACTCCCTTTGGTGATGAACAACAATGTGGAAGAGTAAGCTAAAT
AAACCCTTTCCTCTCCAACTTTCTTCTTGGTCCTGATGTTTTGTGCAGGA
ATACAAACCCTGACTAAGATACCTCCTCCCTCTCCTCTCCTCCCCTCCCC
TCCTCTGTTGTCTTCCCTCCCCTCGGATTTCTCCTGCCATTTTCCTCTTA
CACATTATGCGTTTACTCACTGACTTACTGCTTGTGCCAGGCTAAGGATA
TTTGCTAACTTCCCATGTTAATCAAGATGCTTTATTAAAATTCACAGAAA
CTTAAAAGGAAAACAAAACAAGACCAAAAAGAAATTTCACAAGAAGATGA
GTGCTCACAGTGTAACGGTTGAAGTTGCAGAATAAGAAGGAAAGGGAGAA
GCCAGGAGTATCCTGAGGATCCAGAGCCTGGAGGGACATCCCTATAAATC
ACTTCCAAGAACAACACTCAGCTTG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGTCTCTGAGCTCACAGATGCTTCATCAACTG
AGGCATCTCCACAGCCTAAAGCCTTTTCTTTTGGAGATTTCAGACCTCTG
GCAAAATCGTTAAATGTGTTCATCAAATGTGTTCAGGTTTTAGATTGATT
GTCCCCGTGCTTTATGTTGCTATCACAGAACAATATGTCATTACCATATG
CAGTCTTAGTTATTAGTGGGAGTGTGTGAAAGGTCTACCATTTGATAGAT
ATTTTGTAACTAGCTACAGCAAGCAAAAAAGCAAATTTATTTATAAAAAA
TACATGAAGATTGTCACCCCAAAGCAGAGACTGGGAAAAATTAGAATGTG
TTTTTCCTTACTCTTGGTTCTGCATCTTAAGCATGTTTGTTCCACACATC
AAAGAGCCTTCCTTGGATACTTTGAAGAAAACAAAAAAAGATGTAACCTC
TAATGACACCTAAGTGCTTTTATCATGTGACTCCAGCCACCCCTGATTTA
CTATGATCTCCCTCCTGTTCTCTGTCCTCTAATATGGTTTAGGAAGAGAT
GAATACTCTGGAGGAGTTGCTGAAACTTTAGAACCCAAAAGACAGTAAGT
AGAAGGTGGGGTGTGGCTAGGAATGAGCAAGGCAATGAAGGCGCTGATGG
TTTGGCCAGCAGCCTGGCTAGTGACCACCTGTCTTGGGGTTTCTATTGCT
GTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_b20.b1 MSMg01no270_b20.b1 CHROMAT_FILE:
MSMg01no270_b20.b1 PHD_FILE: MSMg01no270_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:42 2005
         (685 letters)



>mm_chr6_82532801_82533885
          Length = 1085

 Score =  905 bits (468), Expect = 0.0
 Identities = 507/520 (97%), Gaps = 2/520 (0%)
 Strand = Plus / Minus

                                                                        
Query: 167  tgcattagctcctgcctccaggttcttgccctgtgtgtcttcctgtcctgactccctttg 226
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 tgcatcagctcctgcctccaggttcttgccctgtgtgtcttcctgtcctgactccctttg 1026

                                                                        
Query: 227  gtgatgaacaacaatgtggaagagtaagctaaataaaccctttcc-tctccaactttctt 285
            |||||||||| || | |||||| ||||| |||||||||||||||| || ||||||| |||
Sbjct: 1025 gtgatgaacagcagtatggaagcgtaagttaaataaaccctttccttc-ccaacttgctt 967

                                                                        
Query: 286  cttggtcctgatgttttgtgcaggaatacaaaccctgactaagatacctcctccctctcc 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  cttggtcctgatgttttgtgcaggaatacaaaccctgactaagatacctcctccctctcc 907

                                                                        
Query: 346  tctcctcccctcccctcctctgttgtcttccctcccctcggatttctcctgccattttcc 405
            |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 906  tctcctcccctccagtcctctgttgtcttccctcccctcagatttctcctgccattttcc 847

                                                                        
Query: 406  tcttacacattatgcgtttactcactgacttactgcttgtgccaggctaaggatatttgc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  tcttacacattatgcgtttactcactgacttactgcttgtgccaggctaaggatatttgc 787

                                                                        
Query: 466  taacttcccatgttaatcaagatgctttattaaaattcacagaaacttaaaaggaaaaca 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  taacttcccatgttaatcaagatgctttattaaaattcacagaaacttaaaaggaaaaca 727

                                                                        
Query: 526  aaacaagaccaaaaagaaatttcacaagaagatgagtgctcacagtgtaacggttgaagt 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  aaacaagaccaaaaagaaatttcacaagaagatgagtgctcacagtgtaacggttgaagt 667

                                                                        
Query: 586  tgcagaataagaaggaaagggagaagccaggagtatcctgaggatccagagcctggaggg 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  tgcagaataagaaggaaagggagaagccaggagtatcctgaggatccagagcctggaggg 607

                                                    
Query: 646  acatccctataaatcacttccaagaacaacactcagcttg 685
            ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 606  acatccctacaaatcacttccaagaacaacactcagcttg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_b20.g1 MSMg01no270_b20.g1 CHROMAT_FILE:
MSMg01no270_b20.g1 PHD_FILE: MSMg01no270_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:42 2005
         (685 letters)



>mm_chr6_82395054_82396139
          Length = 1086

 Score = 1241 bits (642), Expect = 0.0
 Identities = 675/686 (98%), Gaps = 1/686 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtctctgagctcacagatgcttcatcaactgaggcatctccacagcctaaagcctttt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aggtctctgagctcacagatgcttcatcgactgaggcatctccacagcctaaagcctttt 260

                                                                       
Query: 61  cttttggagatttcagacctctggcaaaatcgttaaatgtgttcatcaaatgtgttcagg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 cttttggagatttcagacctctggcaaaatcattaaatgtgttcatcaaatgtgttcagg 320

                                                                       
Query: 121 ttttagattgattgtccccgtgctttatgttgctatcacagaacaatatgtcattaccat 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ttttagattgattgtccccgtgctttatgttgctatcacggaacaatatgtcattaccat 380

                                                                       
Query: 181 atgcagtcttagttattagtgggagtgtgtgaaaggtctaccatttgatagatattttgt 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcagtcttagttattagtgggaatgtgtgaaaggtctaccatttgatagatattttgt 440

                                                                       
Query: 241 aactagctacagcaagcaaaaaagcaaatttatttataaaaaatacatgaagattgtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactagctacagcaagcaaaaaagcaaatttatttataaaaaatacatgaagattgtcac 500

                                                                       
Query: 301 cccaaagcagagactgggaaaaattagaatgtgtttttccttactcttggttctgcatct 360
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccaaagcagagattggaaaaaattagaatgtgtttttccttactcttggttctgcatct 560

                                                                       
Query: 361 taagcatgtttgttccacacatcaaagagccttccttggatactttgaagaaaacaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagcatgtttgttccacacatcaaagagccttccttggatactttgaagaaaacaaaaa 620

                                                                       
Query: 421 aag-atgtaacctctaatgacacctaagtgcttttatcatgtgactccagccacccctga 479
           ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 aaggatgtaacctctaatgacacctaagagcttttatcatgtgactccagccacccctga 680

                                                                       
Query: 480 tttactatgatctccctcctgttctctgtcctctaatatggtttaggaagagatgaatac 539
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 681 tttactatgatctccctcctgttctctgtcctctgatatggtctaggaagagatgaatac 740

                                                                       
Query: 540 tctggaggagttgctgaaactttagaacccaaaagacagtaagtagaaggtggggtgtgg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctggaggagttgctgaaactttagaacccaaaagacagtaagtagaaggtggggtgtgg 800

                                                                       
Query: 600 ctaggaatgagcaaggcaatgaaggcgctgatggtttggccagcagcctggctagtgacc 659
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 801 ctaggaatgagcaaggcaatgaaggcgctgatggtttggccaacagcctggctagtgacc 860

                                     
Query: 660 acctgtcttggggtttctattgctgt 685
           ||||||||||||||||||||||||||
Sbjct: 861 acctgtcttggggtttctattgctgt 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space:   726300
Effective search space used:   726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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