Query= MSMg01no270_e02.b1 MSMg01no270_e02.b1 CHROMAT_FILE:
MSMg01no270_e02.b1 PHD_FILE: MSMg01no270_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:52 2005
(694 letters)
>mm_chr6_14156629_14157723
Length = 1095
Score = 1297 bits (671), Expect = 0.0
Identities = 685/690 (99%), Gaps = 1/690 (0%)
Strand = Plus / Plus
Query: 5 gaattcctctggcctgtacacagagggaaaggacaacttgcatgtggattctctgatagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctggcctgtacacagagggaaaggacaacttgcatgtggattctctgatagc 264
Query: 65 ttatttttaggaaacattttagattccaatattacaatgtttcaatattgaatatatcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatttttaggaaacattttagattccaatattacaatgtttcaatattgaatatatcag 324
Query: 125 gtgaaaaaaagatttcgatatgcaagattaaaatttggacaactcattatgttgcatggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgaaaaaaagatttcgatatgcaagattaaaatttggacaactcattatgttgcatggc 384
Query: 185 tgtttggttgtaaaagggcatattcaagatggatgaatgttgcagctcttactgataatt 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 tgtttggttgtaaaagggcatattcaagatggatgaatgttgcagttcttactgataatt 444
Query: 245 ctcattttt-gttcttttagtctaacaaaaaagtaaataggatggggacagtatgtggtt 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcattttttgttcttttagtctaacaaaaaagtaaataggatggggacagtatgtggtt 504
Query: 304 ttggatataaggaaattaagtttcttgtttatgtatccttgttacatttgctatccttta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttggatataaggaaattaagtttcttgtttatgtatccttgttacatttgctatccttta 564
Query: 364 tctatttctaatgaagagtaatagcttattaaaaacattttaatttaggtttaaggatga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctatttctaatgaagagtaatagcttattaaaaacattttaatttaggtttaaggatga 624
Query: 424 gagatgcttagaaagacatctaagagaatgggtatatatccaagtgtgagcccgggctta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagatgcttagaaagacatctaagagaatgggtatatatccaagtgtgagcccgggctta 684
Query: 484 aggggcaatacatccttcatctcttgacctttccgtaagatgtttgccatgtaaaaatga 543
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 aggggcaatacatccttcatctcttgacctttccataagatgtttgccatgtaaaaatga 744
Query: 544 tgtatcatatcttanaatattcctatatattttcacatactacatgttcacaccatcctt 603
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtatcatatcttaaaatattcctatatattttcacatactacatgttcacaccatcctt 804
Query: 604 tgaaatgcccaaacttaacttgtattttcagtgttcactcaaaatcagtcctattgcacc 663
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 805 tgaaatgcccaaacttaacttgtattttcagtgttcactcaaaatcagtcctgttgcacc 864
Query: 664 cagtaacagacagatatatgtagtctaggc 693
||||||||||||||||||||||||||||||
Sbjct: 865 cagtaacagacagatatatgtagtctaggc 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space: 742140
Effective search space used: 742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_e02.g1 MSMg01no270_e02.g1 CHROMAT_FILE:
MSMg01no270_e02.g1 PHD_FILE: MSMg01no270_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:52 2005
(673 letters)
>mm_chr6_14246894_14247966
Length = 1073
Score = 1255 bits (649), Expect = 0.0
Identities = 667/673 (99%)
Strand = Plus / Minus
Query: 1 cacctagaaaaggtttcctcagtacaaaatcttttgaaaagggagagactccaaacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 cacctagaaaaggtttcctcagtacaaaatcttttgaaaagggagagactccaaacagca 814
Query: 61 ggggaaaggtagttctaaatataacctcatgctctgaagacagacagccacactctcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ggggaaaggtagttctaaatataacctcatgctctgaagacagacagccacactctcctc 754
Query: 121 aagaacacagacaagtaatgtgaccactgcttaatgtcacagggacttgcagactctatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aagaacacagacaagtaatgtgaccactgcttaatgtcacagggacttgcagactctatt 694
Query: 181 tatataaactggcagacactgatgcagtttcaaataaatttctaaaacaccattcctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tatataaactggcagacactgatgcagtttcaaataaatttctaaaacaccattcctctt 634
Query: 241 ctgtgtgctgtaacttttctgttttatgaagaaaaaaatcaatttaaattttgaaattaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctgtgtgctgtaacttttctgttttatgaagaaaaaaatcaatttaaattttgaaattaa 574
Query: 301 acttgaagaaaacaacaagcctaataaaattaaatgaaatgtttgatttggtggatacgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 573 acttgaagaaaacaacaagcctaataaaattaaatgaaatgtttgatttggtggataagt 514
Query: 361 acagagctattagagacacactatgaaaaggctatttttccacatgaactgcaaaagaaa 420
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 513 acagagctattggagacacactatgaaaaggctatttttccacaggaactgcaaaagaaa 454
Query: 421 aaaattaccatttcaatgaaatctgatggtgaagggtttaagagcagagtcaccacaggc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 453 aaaattaccatttcaatgaaatctgatggtgaagggtttaagaacagagtcaccacaggc 394
Query: 481 tctgaaatgaaacggaaccgcatttgagtcttaggtggaagaactctgactgtttacaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tctgaaatgaaacggaaccgcatttgagtcttaggtggaagaactctgactgtttacaca 334
Query: 541 atggctaagctttcttcattatcagtatggtgcaaatcacttccttgtatcttattagta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atggctaagctttcttcattatcagtatggtgcaaatcacttccttgtatcttattagta 274
Query: 601 aaaaagttgttaagattattggacagtgtctagcatagagcaagggctgagaaataccag 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 273 aaaaagttgttaagattattggacagtgtctagcatagagcaagggctgagatatgccag 214
Query: 661 tgattcattatat 673
|||||||||||||
Sbjct: 213 tgattcattatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
