Query= MSMg01no270_i02.b1 MSMg01no270_i02.b1 CHROMAT_FILE:
MSMg01no270_i02.b1 PHD_FILE: MSMg01no270_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:10 2005
(693 letters)
>mm_chr6_54579091_54580183
Length = 1093
Score = 1056 bits (546), Expect = 0.0
Identities = 576/596 (96%), Gaps = 16/596 (2%)
Strand = Plus / Minus
Query: 114 gctcatttaagagaacctcattggctctccagcctaaaactctgatcttacaaatactac 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 gctcatttaagagaacctcattggctctccagcctaaaactctgatcttacaaatactac 1034
Query: 174 caatattaccaacatgtattactatggggccaatgcttggctcagcagacttcccacaga 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 caatattaccaacatgtattactatggggccaatgcttggctcagcagacttcccacaga 974
Query: 234 aggttacagctttggtcacagcctctctgaaaggcacgggtggtgtgagctgtgagcatt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 aggttacagctttggtcacagcctctctgaaaggcacgggtggtgtgagctgtgagcatt 914
Query: 294 ccag----------------ctgagctgggtgagcaatccagctgactccacctcttacc 337
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 ccagctgagctgagctgagcctgagctgggtgagcaatccagctgactccacctcttacc 854
Query: 338 tcttcagccacaagagggcttccgtcgccgagttcctaacctgagcgacgtcggcctcca 397
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 853 tcttcagccacaagagggcttccgtcgccgagttcctaacctgagcgacgtcagcctcca 794
Query: 398 cctcatgcagcactatcttctggagggtagtgaactcttccttgttggttatgtacttct 457
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 793 cctcatgcagcactatcttctggagggtagtaaactcttccttgttggttatgtacttct 734
Query: 458 gatttaccttctggaaacaaaacaaaacaaaacggggcaactgtggcagctggaaactgt 517
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 733 gatttaccttctggaaacaaaacaaaacaaaacagggcaactgtggcagctggaaactgt 674
Query: 518 gacatcaccagtactgtcagtacagaattcaaatctacaagcaacaagacttctaggaga 577
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gacatcaccagtaccgtcagtacagaattcaaatctacaagcaacaagacttctaggaga 614
Query: 578 ccaaagtcaacttgactatctttcttgtttttagggtaatgtattttaaaaattccaaaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccaaagtcaacttgactatctttcttgtttttagggtaatgtattttaaaaattccaaaa 554
Query: 638 attctgtgagctttaacaaactccaagagtcccaagctttaagcatcattcttggg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attctgtgagctttaacaaactccaagagtcccaagctttaagcatcattcttggg 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_i02.g1 MSMg01no270_i02.g1 CHROMAT_FILE:
MSMg01no270_i02.g1 PHD_FILE: MSMg01no270_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:10 2005
(660 letters)
>mm_chr6_54436768_54437827
Length = 1060
Score = 1116 bits (577), Expect = 0.0
Identities = 654/719 (90%), Gaps = 60/719 (8%)
Strand = Plus / Plus
Query: 1 aaatgctaggttcctcatccacccctgtgtaagggaggctgcttaaggccctgttttcaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 141 aaatgctaggttcctcatccacccctgtgtaagggaggctgcttaaggggctgttttcaa 200
Query: 61 aataatgccacctttcaagtggcattgctaatgagggccac------------------- 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatgccacctttcaagtggcattgctaatgagggccacctttcacatggcattgcta 260
Query: 102 -----------------------------------------ctttcacatggcattgcta 120
|||||||||||||||||||
Sbjct: 261 atgagggccacctttcacatggcattgctaatgagggccatctttcacatggcattgcta 320
Query: 121 atgagggccacctttcacgtggcattgctaatgagggcttgcatgtagcttgtagtgcat 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagggccacctttcacatggcattgctaatgagggcttgcatgtagcttgtagtgcat 380
Query: 181 gatttacttcctagtcccttgtggagtcccatcctgaggagcagtgagccatggcagggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttacttcctagtcccttgtggagtcccatcctgaggagcagtgagccatggcagggt 440
Query: 241 caccaagggaaagggcagcaggagagcacccgtactgaggcgccagggtgtgagttagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccaagggaaagggcagcaggagagcacccgtactgaggcgccagggtgtgagttagag 500
Query: 301 atgccgcagcaggcagcaagcaaagcactgtagaggaaagagggaaccagggagactctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgccgcagcaggcagcaagcaaagcactgtagaggaaagagggaaccagggagactctc 560
Query: 361 acctctgccaaccaagcagggaaaggtgtgaggaaggaggttggtgtgagatggaccctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctctgccaaccaagcagggaaaggtgtgaggaaggaggttggtgtgagatggaccctg 620
Query: 421 gcaggcaagacggttatacccaggctggatggaaaagcaaggtttagagcatggggagaa 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gcaggcaagacggttatacccaggctggatggagaagcaaggtttagagcatggggagaa 680
Query: 481 ctagtgtgcgcagagtgcaggacaggaataccctccgaaagtcctccttctgacctcact 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagtgtgcgcagagtgtaggacaggaataccctccgaaagtcctccttctgacctcact 740
Query: 541 gggcacttgcccatacgtcttcctttcagttctatccctctgcagtaggactgtgccatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggcacttgcccatacgtcttcctttcagttctatccctctgcagtaggactgtgccatc 800
Query: 601 tgaccatgaggcttagtgcatcactggtagtatagtggcagctaaggctggcacatttc 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaccatgaggcttagtgcatcactggtagtatagtggcagctaaggctggcacatttc 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
