BAC Information

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BAC

Clone NameMSMg01-270K09
Chromosome6 (Build37)
Map Location 22,875,448 - 23,045,659
singlet/doubletdoublet
Overlap genePtprz1, Aass
Upstream geneIng3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022
Downstream geneEG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270K09.T7 (MSMg01no270_k09.b1)MSMg01-270K09.TJ (MSMg01no270_k09.g1)
ACCAG410425AG410426
length728740
length of high quality
(start - end)		628 (43 - 670)664 (75 - 738)
definitionCHROMAT_FILE: MSMg01no270_k09.b1 PHD_FILE: MSMg01no270_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:21 2005CHROMAT_FILE: MSMg01no270_k09.g1 PHD_FILE: MSMg01no270_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,045,036 - 23,045,659)(22,875,448 - 22,875,829)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATATTCTAACATTCAAACTGCCTTTATAGTTCTGTAAGAGAGTTTCT
CATAGGGAAGCATCGTATTTGCCTGTTATTTATAATTCTGTTTTTCCTTG
TTACCTGGATGATTCCTCACTGTGAGTGTAATGATGTGTCAACCAGTCCG
TCATTTCCTCAGTCTGTGTGCATCAGAGCTCCTGGGGCAGCTGGGCTGAT
TGGCTGGCATTCCTGGAACTGCCTTCTTTCATTCCCTAGTGTATTCTTAT
GGCCGGAATCTGATCATGGAGATCTTACCTAAAAAGGGAATTTACTTTAG
TCTTACATTCTTTTCATTGCTTACCACAGTGACTATTAACCTGGAATTTG
GGGTTAGGGGTACCGTTGATGTGGACTGAATTGGAATCTAGGAGTGTTTT
AAAGATTTTATATTGGTACATCAAAATAATGTTTTATTTATACAAATTAT
ATAAGGTACTACTGGAAAGAATATCTAATAAGCAGGTAATGGTGGTTCTT
TCAGTTAAATGGATGGGAATTGTAGTTGAAGGAGATCTCCTATCATTAGT
GTGCATGTGTTACTGGGTCAAGATGGATGGGAACATTTTTATATTAGTAT
TTATTCACTTATTACAAATGANAAAGTTAGCAGATTGCAGTGTGAGAATA
CCCTAAAGACCCCACCATCCGAGTTTGC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTACAATGTCCAATACAGCCTTTC
CCCTTATCATAGTCATACATTAAAGATTTCAGTTTCCTCAAGACATCTAA
TTTCATTTGATTTCAGAAGGAAACACGTTTGGAACGCGAGATAATCCTTT
GGGCTCTTGGATATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGA
GTTAAATACCTAATAAAAAATGGAAAAAAAAATTATTGAACATAAAAAAA
AACTATATCAATACTAAATAAAAGTGGACCCATTTTAACCTTTAAAAAAA
AAAAAGAATTTATAGGTGTGTGTTAGATTGTAAACCCAAAATGGTTTCAA
GTAGCAGGATTTCAGGTCTTGAACTTGAAGACAAGCTGTCCTTTCTGGCC
ATGTCTCCTTCATGATGATGCCTCCGAGTTGCTGTGAACTTTGTTCTGCC
TCTGCCTAAACTTTAGCAGTCTTTACAAGTATTACTTACAGTTTTCACTA
ATTACTCCAGATGTGTCGATGCCGATAACAGTGGAGACGTGACTGAATGG
AGATGTCGGGAGGGCAGCATAGAAAAGAATGTTAAAAATAATCACCCATG
CTGTTTAAAATATTTAGACAACTTATCATTTTAAGTTTTAGCCACCTGTT
TTTCTTCAAATTAATGGTTTCATTATTCTTGGTTCTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_k09.b1 MSMg01no270_k09.b1 CHROMAT_FILE:
MSMg01no270_k09.b1 PHD_FILE: MSMg01no270_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:21 2005
         (628 letters)



>mm_chr6_23044832_23045859
          Length = 1028

 Score = 1152 bits (596), Expect = 0.0
 Identities = 617/624 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatattctaacattcaaactgcctttatagttctgtaagagagtttctcatagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gaattccatattctaacattcaaactgcctttatagttctgtaagagagtttctcatagg 769

                                                                       
Query: 65  gaagcatcgtatttgcctgttatttataattctgtttttccttgttacctggatgattcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaagcatcgtatttgcctgttatttataattctgtttttccttgttacctggatgattcc 709

                                                                       
Query: 125 tcactgtgagtgtaatgatgtgtcaaccagtccgtcatttcctcagtctgtgtgcatcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tcactgtgagtgtaatgatgtgtcaaccagtccgtcatttcctcagtctgtgtgcatcag 649

                                                                       
Query: 185 agctcctggggcagctgggctgattggctggcattcctggaactgccttctttcattccc 244
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 648 agctcctggggcagctgggctgatgggctgccattcctggaactgccttctttcattccc 589

                                                                       
Query: 245 tagtgtattcttatggccggaatctgatcatggagatcttacctaaaaagggaatttact 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tagtgtattcttatggccagaatctgatcatggagatcttacctaaaaagggaatttact 529

                                                                       
Query: 305 ttagtcttacattcttttcattgcttaccacagtgactattaacctggaatttggggtta 364
           ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 528 ttagttttacattcttttcattgcttagcacagtgactattaatctggaatttggggtta 469

                                                                       
Query: 365 ggggtaccgttgatgtggactgaattggaatctaggagtgttttaaagattttatattgg 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggggtaccgttgatatggactgaattggaatctaggagtgttttaaagattttatattgg 409

                                                                       
Query: 425 tacatcaaaataatgttttatttatacaaattatataaggtactactggaaagaatatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tacatcaaaataatgttttatttatacaaattatataaggtactactggaaagaatatct 349

                                                                       
Query: 485 aataagcaggtaatggtggttctttcagttaaatggatgggaattgtagttgaaggagat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aataagcaggtaatggtggttctttcagttaaatggatgggaattgtagttgaaggagat 289

                                                                       
Query: 545 ctcctatcattagtgtgcatgtgttactgggtcaagatggatgggaacatttttatatta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctcctatcattagtgtgcatgtgttactgggtcaagatggatgggaacatttttatatta 229

                                   
Query: 605 gtatttattcacttattacaaatg 628
           ||||||||||||||||||||||||
Sbjct: 228 gtatttattcacttattacaaatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_k09.g1 MSMg01no270_k09.g1 CHROMAT_FILE:
MSMg01no270_k09.g1 PHD_FILE: MSMg01no270_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:21 2005
         (664 letters)



>mm_chr6_22875109_22876172
          Length = 1064

 Score =  716 bits (370), Expect = 0.0
 Identities = 379/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 283 aatttataggtgtgtgttagattgtaaacccaaaatggtttcaagtagcaggatttcagg 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aatttataggtgtgtgttagattgtaaacccaaaatggtttcaagtagcaggatttcagg 399

                                                                       
Query: 343 tcttgaacttgaagacaagctgtcctttctggccatgtctccttcatgatgatgcctccg 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcttgaacttgaagacaagctgtcctttctggccatgtctccttcatgatgatgcctccg 459

                                                                       
Query: 403 agttgctgtgaactttgttctgcctctgcctaaactttagcagtctttacaagtattact 462
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 460 agttgctgtgaactttgttctgactctgcctaaactttagcagtctttacaagtattact 519

                                                                       
Query: 463 tacagttttcactaattactccagatgtgtcgatgccgataacagtggagacgtgactga 522
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tacagttttcactaattactgcagatgtgtcgatgccgataacagtggagacgtgactga 579

                                                                       
Query: 523 atggagatgtcgggagggcagcatagaaaagaatgttaaaaataatcacccatgctgttt 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atggagatgtcgggagggcagcatagaaaagaatgttaaaaataatcacccatgctgttt 639

                                                                       
Query: 583 aaaatatttagacaacttatcattttaagttttagccacctgtttttcttcaaattaatg 642
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 640 aaaatatttagacaacttatcattttaagttttagccacctgtttttcttcaaatcaatg 699

                                 
Query: 643 gtttcattattcttggttctag 664
           ||||||||||||||||||||||
Sbjct: 700 gtttcattattcttggttctag 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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