ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGAGCCATGGAGAACTACTGCACTCTATTCTCTTTCCATTTCTTCCG
TTTCTATTGTTATGGCACCTCAAATAAACATGATGTATTCTCACAGTGTT
ATTTATAGAACACAATGTGCTTTTAGACGTTCATGGCAGTGCATTTTCTT
TTCCTATGTGCGTATATTTTTACCTAATTTATGCATGTCACTTTTTAAAT
TTTCTTTTTCCACCATCAGGCTTCTTCTTTCAAAGATGTGTGATTGAAAA
TTTCTAGCTTTGGAGAAAGACATACCTGCATTGAAACTGAGCTTAAGTTT
TCATGCTAGGACAGCATAAAAAAAAAAAAAAACAACCAACCAACCAACCA
AACTAACAAAACACACACACACACACAAAACTAAACAAAAAACAAACAAA
CAAAAACCAACAAAAAATTAGAATCTAAAGTTTTAGTTTCACTGTATAGA
AATAAAAATAATAGTATCTCTGCTTAAAATTATTGTGATAATTAAACAGA
ATAGTGTACATACCAGACTCAGCAAGAGAAAGCATTGAATAAATTTTGGC
TTTTTTTTTTAATCAAGAGCTCAACATATTTTCCAAATTTGAAGAAGATG
ATCAATGTTGGTTCTTGCTACACTTTTTTGACTTGCAAGCCTCTTTCTAC
ATCCACCCCTTTTTTCTTTTCTTTTCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAAGTTAGACTCCAGAGAAACAAATAACTC
TATTAAGAAATGGGGTACACAGCTAAACAAACAACGCTCAACTGAGGAAT
ACCGAATGGCTGAGAAGCACCTAAAAAAAAAAATGCTCAACATCCTTAGT
GATCAGGTAAATGCAAATCAAAACAACCCTGAGATTTCACCTCATACCAG
TTAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGAA
TGTGGAGAAAGAGGAACGCTCTTCCATTGCAGGTGGGAATGCAAGCTTGT
ACANCTCNTCTGGTAATCAGTCTGGCGTCCCTCANNAAAATTGGGACTAG
TACTACCTGAGGGATCCGCAATACTCCGGNNNGGCAAATATTCTGGAAAA
TGCTCCCATGGGTGATNAGGGGAACTTGTTTCCATGTAAAAANNNNNNCC
CCTTTTTTATTTAACCCAAAAATGTGAGAAAAACCACAATTGTCCCCCCC
CCCAAAGGAAGGGCTTCAAACATGATCAGTTGTTAAAANNNNNNNNNNTC
CTAAATTAATAAAAGGTGGCCCAGGGNNNNNNNNNNNNNNNNNNNNNNNN
NNCNNCCNTNCNCCCATCCTNNNNCCNNNNNNNCCNNNCCAACACANNNN
CACCAAAGCACAACAATCAAANNNNNNNNNNNNNNNNNNNNNNNNAAATA
NNNAATAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNGGGTCCCCCCCACA
CGACACCCCCCA

Query= MSMg01no270_m23.b1 MSMg01no270_m23.b1 CHROMAT_FILE:
MSMg01no270_m23.b1 PHD_FILE: MSMg01no270_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:33 2005
         (687 letters)



>mm_chr6_12759159_12760245
          Length = 1087

 Score =  783 bits (405), Expect = 0.0
 Identities = 491/537 (91%), Gaps = 40/537 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgagccatggagaactactgcactctattctctttccatttcttccgtttcta 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcatgagccagggagaactactgcactctattctctttccatttcttccgtttcta 466

                                                                       
Query: 65  ttgttatggcacctcaaataaacatgatgtattctcacagtgttatttatagaacacaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttgttatggcacctcaaataaacatgatgtattctcacagtgttatttatagaacacaat 406

                                                                       
Query: 125 gtgcttttagacgttcatggcagtgcattttcttttcctatgtgcgtatatttttaccta 184
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 405 gtgcttttagacgttcacggcagtgcattttcttttcctatgtgcttatatttttaccta 346

                                                                       
Query: 185 atttatgcatgtcactttttaaattttctttttccaccatcaggcttcttctttcaaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atttatgcatgtcactttttaaattttctttttccaccatcaggcttcttctttcaaaga 286

                                                                       
Query: 245 tgtgtgattgaaaatttctagctttggagaaagacatacctgcattgaaactgagcttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgtgtgattgaaaatttctagctttggagaaagacatacctgcattgaaactgagcttaa 226

                                                                       
Query: 305 gttttcatgctaggacagcataaaaa-aa-------------aaaaaaaacaaccaacca 350
           |||||||||||||||||||||||||| ||             |||||||| ||  ||  |
Sbjct: 225 gttttcatgctaggacagcataaaaacaacaacaacaagaacaaaaaaaaaaa--aa--a 170

                                                                       
Query: 351 accaaccaaactaacaaaac-acacacaca----cacaca-aaactaaacaaaaaacaaa 404
           |  ||  |||  || ||||| |||||||||    |||||| |||| ||||||||||||||
Sbjct: 169 a--aa--aaa--aa-aaaaccacacacacataaacacacacaaac-aaacaaaaaacaaa 118

                                                                       
Query: 405 caaa------caaaaa--ccaacaaaaaattagaatctaaagttttagtttcactgtata 456
            |||      ||||||  ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 117 aaaaacaccccaaaaaaaccaacaaaaaattagaatctaaagttttagtttcactgtcta 58

                                                                    
Query: 457 gaaataaaaataatagtatctctgcttaaaattattgtgataattaaacagaatagt 513
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  gaaataaaaataatagtatctctgcttaaaattattgtgataattaaacagaatagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)