BAC Information

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BAC

Clone NameMSMg01-270P07
Chromosome6 (Build37)
Map Location 11,998,276 - 11,998,589
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufa4, Phf14, LOC100040844
Downstream geneEG625347, LOC435879, Thsd7a, LOC667735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270P07.T7 (MSMg01no270_p07.b1)MSMg01-270P07.TJ (MSMg01no270_p07.g1)
ACCAG410645AG410646
length736718
length of high quality
(start - end)		318 (40 - 357)635 (79 - 713)
definitionCHROMAT_FILE: MSMg01no270_p07.b1 PHD_FILE: MSMg01no270_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:44 2005CHROMAT_FILE: MSMg01no270_p07.g1 PHD_FILE: MSMg01no270_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CAATATGAATGTAATTCAATCTATGATCCTCTTAGTACCATTTTATATTA
CAGGGCATTACTGAGACGGAACACTGGAACGAAACTGAGGAACAGAGGGA
ATGTGTGCACAGAAGCCTTCTGATATTTGTTGGTTCTGTCTATAAATGTA
GGATGTTGGGAAATCATTGCTAGGTTTTCATACAGAGCTGTGATTATATC
TTCAGAGAGACTCCTCAATTACAGAACATTTACTATTTATACCCATGGAA
TAAGTATATTAAATTACTCACCAATTGTAAAAACATTAAGTGTGTTTGTC
ACTTAATATTATGTACATATTCCTCTACTGCTAAATTTGTAGGAAATACC
CAAACTCTTACTATTGAATAACAATGTAAGTGAACCAAACAAAACAAAGG
CAGTTGTGATGAAATTAGTATTATAAAAATTAATTGTATTTTTAGAAATG
TTGCAATTTTACAGACTCTAGAAATATTTTATTTTTTATGCACATTATAA
AATAAATTCAAGCATCGAAATTAAAATAGAATGTTACATAGAATTAAGTT
AAATGTCACGTTGTTTCACACTTTACTTGGAGGCCTCTGGTGAANAGAAT
AATAAAAGAGAAGTAAGTTTGGGAGAGCTCTTCAGACAGCTTCTAAAGCA
GAGAATGAGAATTGGANGTCCCTACACTAAGTACCA

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATTCCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAAGGAAATG
CAAATCAAAACAACCCTGAGATTCCATCTCACATCAGTCAGAATGGCTAA
GATCAAAAACTCAGGTGACAGCAGATGCCGTCGAAGATGAGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATACCCAGAAGATGTTCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGTAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGTCTCCCAAAAGAGGAATGGATATTTCA
ATTCTTAATACCTATGCCCCAAACACAGGGACAACCAAGCTTATAAAAGA
ACCACTACTATAGCTTAAATCATATATTGACCACTACACACTGGTAGAGG
GAGAGTAAAATACACCACTCTCACCAACAGACAGGTAAACCAGAGAAAAA
CTAAACGAAGGATATTGGAGATAATAGACGTTATAAAACAAGTGGACCTA
ACAGAGACCTGCAGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_p07.b1 MSMg01no270_p07.b1 CHROMAT_FILE:
MSMg01no270_p07.b1 PHD_FILE: MSMg01no270_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:44 2005
         (318 letters)



>mm_chr6_11998072_11998789
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaatatgaatgtaattcaatctatgatcctcttagtaccattttatattacag 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 518 gaattcacaatatgaatgtaattcaatctgtgatcctcttagtaccattttatattacag 459

                                                                       
Query: 65  ggcattactgagacggaacactggaacgaaactgaggaacagagggaatgtgtgcacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggcattactgagacggaacactggaacgaaactgaggaacagagggaatgtgtgcacaga 399

                                                                       
Query: 125 agccttctgatatttgttggttctgtctataaatgtaggatgttgggaaatcattgctag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agccttctgatatttgttggttctgtctataaatgtaggatgttgggaaatcattgctag 339

                                                                       
Query: 185 gttttcatacagagctgtgattatatcttcagagagactcctcaattacagaacatttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gttttcatacagagctgtgattatatcttcagagagactcctcaattacagaacatttac 279

                                                                       
Query: 245 tatttatacccatggaataagtatattaaattactcaccaattgtaaaaacattaagtgt 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 278 tatttatacccatggaataagtatattaaattactcactaattgtaaaaacattaagtgt 219

                         
Query: 305 gtttgtcacttaat 318
           ||||||||||||||
Sbjct: 218 gtttgtcacttaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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