BAC Information

Click to search

BAC

Clone NameMSMg01-271C03
Chromosome6 (Build37)
Map Location 70,996,625 - 70,997,224
singlet/doubletsinglet
Overlap genenone
Upstream geneIgk, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077
Downstream geneLOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271C03.T7 (MSMg01no271_c03.b1)MSMg01-271C03.TJ (MSMg01no271_c03.g1)
ACCAG410772AG410773
length746736
length of high quality
(start - end)
651 (44 - 694)425 (71 - 495)
definitionCHROMAT_FILE: MSMg01no271_c03.b1 PHD_FILE: MSMg01no271_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:57 2005CHROMAT_FILE: MSMg01no271_c03.g1 PHD_FILE: MSMg01no271_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTGTAGACCAGGCTGGCCTCGAACGCAGAAATCCACCTGCCTCT
GCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCTTTCT
TCCTCCTTTTTTAAGGGCACATTTAATGCCAAATGATCAAAAGTTCTCAG
GCCTATCTTAATTTCCAAGTACTTGGTTTTTGTTTGTTTATTAGACACAG
GAATATTTTTACCAAGTTGCTGTCCGAGCCTAAAGTCACTTGGATTCTTT
GTAGTTGTAAGACACAGGATATTTACCTGTTAGTTTTTGTGTCTATCATA
GCTGGGGGTTCCATTGCTGTGGAGAGACACCATGACCATGGCAACTATTA
TAAAGGAAAATATTTAATTGGGGAAACAATTAATACAGTCATCTATCAAA
AATAAAAGGAATAATAGTTCATTATGGTCATGGTGGGAAGTATGGCAGCA
TGCAGGCAGATGTGGTGCTGGAGAAGGAGCTGAGAGTTCTACATCTGGAT
CTAAAGGCAGCAAGAAGAGAGAGTAACACTGGAATGGCTTGAGTGTCTGA
AACCTCAAAACCCAGCCCCACTGACACTTCTTCCAAAAAGGCCACACCTA
CTCCTAGGAAGCCATGCCACCTAGTAGTGCCACTCCTTATGAGCCTATGA
GGACCCTTTTCATTCAAACCACCAGTGTCCCACTTTTTAACATAAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAACTCA
GAAATCTGCCTGCCTCTGCCCCCCAAGTGCTGGGATTAAAGGCGTGTACC
ACCACCGCCCAGTTGATCCTTAATTTTTTTAAAAGATTAATTTGTTTTAT
TTTATGTGCGTGAGTATTTGCCTGCATGCTTATATATGTGCACCATGTGC
ATGCCTAGTGCCATGGATTCCCTGCAGCTGGAGTTACAGATAGCTGTGAG
TTGCCACATGGATGCTGGGAATTGAACCCGGATCCTCTAGAGGAGCAGTC
GGTGCTCTTAACCACTGGGCCATTTCTAAAGCCCTGGAGCATTAAAAGTT
TATAAAGATGCATTCATTTTATTTTATGTGTATGAGCATCTTGCCTGCAT
GTACATATGTGTATTGCATTGTGTGCCTGGTACCTGAAGAGTCCAGAAGA
GGGTGTGAGGTTCCCCTTTAACTGGTGTTAAAGATGGCTTTGAGCCACTA
AGTGGGGTGCTGTGACTCAAGCCTGGGTCCTTTGCAAGTGTAACAAAAAC
TCTAACCACTGAGCCATCTCCCTAGCCCAACACGGACATTGTTTACAGAA
ATCACACTAGCGAACCTACTATCTTCCTAGTCTACTATCCGAGACCGCTG
TGTCTCTAGGTTTAACTTATTTCTCCTGCCTATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_c03.b1 MSMg01no271_c03.b1 CHROMAT_FILE:
MSMg01no271_c03.b1 PHD_FILE: MSMg01no271_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:57 2005
         (651 letters)



>mm_chr6_70996625_70997675
          Length = 1051

 Score = 1160 bits (600), Expect = 0.0
 Identities = 600/600 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtagaccaggctggcctcgaacgcagaaatccacctgcctctgcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggaattcactttgtagaccaggctggcctcgaacgcagaaatccacctgcctctgcctcc 541

                                                                       
Query: 64  caagtgctgggattaaaggcgtgtgccaccacgcccggctttcttcctccttttttaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 caagtgctgggattaaaggcgtgtgccaccacgcccggctttcttcctccttttttaagg 481

                                                                       
Query: 124 gcacatttaatgccaaatgatcaaaagttctcaggcctatcttaatttccaagtacttgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcacatttaatgccaaatgatcaaaagttctcaggcctatcttaatttccaagtacttgg 421

                                                                       
Query: 184 tttttgtttgtttattagacacaggaatatttttaccaagttgctgtccgagcctaaagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tttttgtttgtttattagacacaggaatatttttaccaagttgctgtccgagcctaaagt 361

                                                                       
Query: 244 cacttggattctttgtagttgtaagacacaggatatttacctgttagtttttgtgtctat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cacttggattctttgtagttgtaagacacaggatatttacctgttagtttttgtgtctat 301

                                                                       
Query: 304 catagctgggggttccattgctgtggagagacaccatgaccatggcaactattataaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 catagctgggggttccattgctgtggagagacaccatgaccatggcaactattataaagg 241

                                                                       
Query: 364 aaaatatttaattggggaaacaattaatacagtcatctatcaaaaataaaaggaataata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaaatatttaattggggaaacaattaatacagtcatctatcaaaaataaaaggaataata 181

                                                                       
Query: 424 gttcattatggtcatggtgggaagtatggcagcatgcaggcagatgtggtgctggagaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gttcattatggtcatggtgggaagtatggcagcatgcaggcagatgtggtgctggagaag 121

                                                                       
Query: 484 gagctgagagttctacatctggatctaaaggcagcaagaagagagagtaacactggaatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gagctgagagttctacatctggatctaaaggcagcaagaagagagagtaacactggaatg 61

                                                                       
Query: 544 gcttgagtgtctgaaacctcaaaacccagccccactgacacttcttccaaaaaggccaca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gcttgagtgtctgaaacctcaaaacccagccccactgacacttcttccaaaaaggccaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)