BAC Information

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BAC

Clone NameMSMg01-271J23
Chromosome6 (Build37)
Map Location 125,210,934 - 125,211,251
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27
Downstream gene4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271J23.T7 (MSMg01no271_j23.b1)MSMg01-271J23.TJ (MSMg01no271_j23.g1)
ACCAG411123AG411124
length765753
length of high quality
(start - end)
318 (383 - 700)292 (70 - 361)
definitionCHROMAT_FILE: MSMg01no271_j23.b1 PHD_FILE: MSMg01no271_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:32 2005CHROMAT_FILE: MSMg01no271_j23.g1 PHD_FILE: MSMg01no271_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCC
AATCAACTCTTCACCAAGAAAGCCAACGCTTCTCTTTAGCAGTAAATAGA
TGATCTTGTGGTTCCTCTTCACCAGCCACTACGCCCTCATCAACATGAAT
GTAGCTATAGAAGGTTAATTCATCATCACCCTCTTTGTCCACCACCACCC
CAATTTTTAGGCCCAAGTCTCTCAGAGGATTGGAGACTGGTGAAAGTTAC
ATCAAGATTAACATATGAAAGAAGCCAGTTGTCAGACAAACCCTGGAAGT
CCTTACTCACTGGGCTCCAAACAGCAAACAGAGCATCCCTGAGAAAGCAG
CCTTATTCGAATTTTTACAGATAGGAGCTATGTAGATGGCCTAAACATGG
TCACTGATTTCCTGACCCAGTGCTTCTAAGAACAAGCTTTTCCCTCAGTT
CACAGACCCAGCCCCATTCTCAGAAGTGCTTTCTTTTTCTTAACAAACTG
TCTCTATTTCTATCTCTAACCAGGTGTCCCCTGCTGACCAAATGTTTTGC
CCTCAGACACAGAGATCTGGTAACTTGAGTGGGTGGCCACAGACTCGACT
CCTCACCTATAACACTAGGTTCAATTCCCAGGGCCAAAAAGAAAATCAAG
AAGAATTTATTTCCTATACTTATATCTCAGAGTCTCCAGTCTGTGACACG
GTGAGTGATTCAGTTGTTTCTGGGCCTCTGCTCTCTGAGGCAGAGCATTG
TGACAAATGTGGCGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAACAGCCAGAGAAACCATGTCTCGAATA
AACAAAACAAAACAAAAAAACCAACCAACCAAACAAACAAACAAACAACA
CAAGGCACCTCAGTCCCTTGTCCCAGGTCTGGAAACCAAACACCATCTTT
TCGGTTATTTTTTATTTTAAGATTTACTATTTTTATTTTATACGTATGGC
TCTTTGCCTGCATGCATCTCTGTATACCACATGCATACCTGAGGCCAGGA
GAGGGTGTCTGATCCCTTGGAACTGGAATTAGTGACAATTATAAGCTGCT
ATGTGGGTGCTGTTTTCCCAACCCCGACCCTTTGCAAGAGCAACAAGTAC
TTTTAACTACTGAGCCATCTCTCCGGACAATGCCTTTTCTACTCTTACTC
TTACTCATATCTCCTCTGTAAAACTAGCTGGCTTTTCATGTCCTCAGATT
CACCTGCTTTTACGGTCTTAAACCGAGTTTTATGGAGCATGCTAGTACCC
TGTTGTCTCAAAGCTTCAAAGGTGCTAAGAAAAATCAGCGTTTATCCTAA
GCCCTGAAGGAAAGTCCCCTTTTGTTCCAACTTCTAAATAATAATGGCTT
TGGCAGTTTGCACAGATAGACCATTAAAAGTTCCTTGTAATATTAAGCAT
GGGACCTTGAAGAGTTGTTAATTATTATTTTCAAATTATTGATATTGTAG
GAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_j23.b1 MSMg01no271_j23.b1 CHROMAT_FILE:
MSMg01no271_j23.b1 PHD_FILE: MSMg01no271_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:32 2005
         (318 letters)



>mm_chr6_125210734_125211451
          Length = 718

 Score =  538 bits (278), Expect = e-157
 Identities = 308/318 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatggcctaaacatggtcactgatttcctgacccagtgcttctaagaacaagcttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagatggcctaaacatggtcactgatttcctgacccagtgcttctaagaacaagcttttc 260

                                                                       
Query: 61  cctcagttcacagacccagccccattctcagaagtgctttctttttcttaacaaactgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagttcacagacccagccccattctcagaagtgctttctttttcttaacaaactgtc 320

                                                                       
Query: 121 tctatttctatctctaaccaggtgtcccctgctgaccaaatgttttgccctcagacacag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatttctatctctaaccaggggtcccctgctgaccaaatgttttgccctcagacacag 380

                                                                       
Query: 181 agatctggtaacttgagtgggtggccacagactcgactcctcacctataacactaggttc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agatctggtaacttgagtgggtggccacagactcgaatcctcacctataacactaggttc 440

                                                                       
Query: 241 aattcccagggccaaaaagaaaatcaagaagaatttatttcctatacttatatctcagag 300
           ||||| |||||||||||||||||| || |||| ||||||||||||||||| |||||||||
Sbjct: 441 aattcgcagggccaaaaagaaaataaaaaagagtttatttcctatacttacatctcagag 500

                             
Query: 301 tctccagtctgtgacacg 318
            |||| ||||||| ||||
Sbjct: 501 gctccggtctgtggcacg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)