BAC Information

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BAC

Clone NameMSMg01-272C11
Chromosome6 (Build37)
Map Location 98,144,639 - 98,144,954
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1c, Arl6ip5, Lmod3, Frmd4b, LOC641241, LOC100043692, Mitf
Downstream geneGm765, LOC666019, LOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272C11.T7 (MSMg01no272_c11.b1)MSMg01-272C11.TJ (MSMg01no272_c11.g1)
ACCAG411516AG411517
length741744
length of high quality
(start - end)
328 (46 - 373)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no272_c11.b1 PHD_FILE: MSMg01no272_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:13 2005CHROMAT_FILE: MSMg01no272_c11.g1 PHD_FILE: MSMg01no272_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:13 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTTATTTCCCTCAGATTACACACACACAAACACACACACACAG
ACACACATATTTAATGTATCAACCCTGACAAGTACAATGCAAAGTTGACC
TTCTACAAAATGTGCACCACTGAAGTGAAAGGGAGGCAGAAAAAAACACC
CTAAAATTTGCAGAGGCCCCTCAAATAGAAAATCCTTTGCATTACTAGGT
AAACTCTGAATGACATTGCAAAGTTGCTATAGACTTGACATTTGATTGAC
ACTGTGACAGCTTTTGTAAACCTTATACACTGTCAGTGCAGCCATATTAA
GAACAGTTCTTGACTTTGTAAAGTCACTTTACAAAAAAAGTAACTTGAGG
GTGAAGATTAGGAAACGCCTCATTGACATCCCAAGGGCACTTACATTGAA
AGAATAATGTTCCTCACTTTGGGACCATTTCCTAGGGAGAAAATAGATAT
ATATGTGAGTGTGTTATAGATATATACATTCTATTGTCCCTAGAAGGTGT
ATTCCTTCTAGGGACAATGTGTTGGCTGTGTGAGTCCTTGAGATTCATTA
AAGGGCCGATGGATGCCGACTCTGCATTCATTTCCGCACTGTGTGAGACA
CTTCTAGTGAAATTCAATTGTGACTATGAATGCTTCCGACCAGATACAAT
TTTAACAGTTTCTGCCACTGTAGTGGGAAGACCAAATATCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATGTGTATGCATGAGTGGGCCTC
TGATTCTTGTGCCTTCTCTTGGACTCATTCCCTTCTGTTGGTTTGTCCTG
TCCAACTTCAATATAACAGTTGTGGCTTTATCTGATTATGTTTAGTTTTG
TTATATTTTATAACTTTCTCTTGGAAGCCTGTTCTTTTCTAATGAGAGAT
GAAAGAGACAGAAAGGGGGTTCATCTGGGTGGGAGGGGGTGCAACTGGGG
AGAGTATAGGGAGGGGAAGCCATAATCAGAATGTATTTTTTTATGTGAGT
AAATCTATTTATTTTTTTAACCCCCCCCCCCCACCAAAACTCAACTCACC
CTATTTAAAAATATCCCCCCCTCCAATAACCTAAATTTGAAATTGCATCA
AACCTGTGTATTCTGTAGGTACACCTTTGCCAGGAAAATAATTATATCAT
TTTTCTGATGCTAAGCCTTGCTTAGAACTGGATTCTCACATTCCTTAGAG
AATTAAATGTAGTAATCCCTTGTGATGTGGGCTGATGGTATGTAGCAGAA
AGTGGTATCTTGACTACATCCTGTCCGCTCCATTTCCTGTTGCTATTGCA
ATGGTTTGCGCCAAGCCTATTTTTTGATTGTGCTCTTTTTTCCTGACTTC
TTTGAAATTCTTCTTAAAGCTAATCTTCCCCATTTCATCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_c11.b1 MSMg01no272_c11.b1 CHROMAT_FILE:
MSMg01no272_c11.b1 PHD_FILE: MSMg01no272_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:13 2005
         (328 letters)



>mm_chr6_98144376_98145103
          Length = 728

 Score =  555 bits (287), Expect = e-162
 Identities = 313/325 (96%), Gaps = 10/325 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttta-tttccctcagattacacacacacaaacacacacacacagacacacat 63
           |||||||||||| ||| |||||||||||||||||    ||||||||||||  ||||||  
Sbjct: 579 gaattctctttacttt-cctcagattacacacac----acacacacacac--acacac-- 529

                                                                       
Query: 64  atttaatgtatcaaccctgacaagtacaatgcaaagttgaccttctacaaaatgtgcacc 123
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atttaatgtatcaattctgacaagtacaatgcaaagttgaccttctacaaaatgtgcacc 469

                                                                       
Query: 124 actgaagtgaaagggaggcagaaaaaaacaccctaaaatttgcagaggcccctcaaatag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 actgaagtgaaagggaggcagaaaaaaacaccctaaaatttgcagaggcccctcaaatag 409

                                                                       
Query: 184 aaaatcctttgcattactaggtaaactctgaatgacattgcaaagttgctatagacttga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaaatcctttgcattactaggtaaactctgaatgacattgcaaagttgctatagacttga 349

                                                                       
Query: 244 catttgattgacactgtgacagcttttgtaaaccttatacactgtcagtgcagccatatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 catttgattgacactgtgacagcttttgtaaaccttatacactgtcagtgcagccatatt 289

                                    
Query: 304 aagaacagttcttgactttgtaaag 328
           |||||||||||||||||||||||||
Sbjct: 288 aagaacagttcttgactttgtaaag 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)