Query= MSMg01no272_e13.b1 MSMg01no272_e13.b1 CHROMAT_FILE:
MSMg01no272_e13.b1 PHD_FILE: MSMg01no272_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:24 2005
(319 letters)
>mm_chr6_35258791_35259509
Length = 719
Score = 427 bits (221), Expect = e-124
Identities = 300/343 (87%), Gaps = 27/343 (7%)
Strand = Plus / Plus
Query: 4 ggaattcactttgtataccaggctggcctcgaactcagaaatccgcctgcctctgcctcc 63
|||| |||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 177 ggaactcactttgtaaatcaggctggcctagaactcagaaatctgcctgcctctgcctcc 236
Query: 64 cgagtgctgggattaccggcgtgcgccactacgcccggcgatttagcctttctttttttc 123
|||||||||||||| |||||| ||||| | ||||||| ||||||||||| ||||||||
Sbjct: 237 tgagtgctgggattaaaggcgtgtgccaccatgcccggcaatttagcctttatttttttc 296
Query: 124 attttcatattcagaaaggacagatttggaacaagacgaaaaaga-------cccccccc 176
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 297 attttcatattcagaaagaacagatttggaacaagacgaaaaagaaaaagaccccccccc 356
Query: 177 caa--------------------cttcttttaagtgatggtcttggctggatcaacttga 216
||| |||||||||||||||||| ||||| ||||||||||||
Sbjct: 357 caaaaaaaaaaaaaaaccaaaaccttcttttaagtgatggtattggccggatcaacttga 416
Query: 217 tctggtagctgcagagctagatcttgtgagcccacgttctttttgaattcacaggatttg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tctggtagctgcagagctagatcttgtgagcccacgttctttttgaattcacaggatttg 476
Query: 277 tgcaccttgtgcagccatagccctttgaagtgacccctggcct 319
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgcaccttgtgcagccatagccctttgaagtgacccctggcct 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_e13.g1 MSMg01no272_e13.g1 CHROMAT_FILE:
MSMg01no272_e13.g1 PHD_FILE: MSMg01no272_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:24 2005
(291 letters)
>mm_chr6_35457288_35457978
Length = 691
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%)
Strand = Plus / Minus
Query: 1 ctgagacctgtgccttacccacgctcccccctcccttttttaagtctcccaatccccaaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctgagacctgtgccttacccaagctcccccctcccttttttaagtctcccaatccccaaa 430
Query: 61 aacagaatgcttggtcatgagctagtgtcatacatagttctatcctcaggtctaggtggg 120
||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 aacagaaagcttgatcatgagctattgtcatacatagttctatcctcaggtctaggtggg 370
Query: 121 attgctctaacagcaaccctatatatccagcaggagaacactaaggctgagttctgccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 attgctctaacagcaaccctatatatccagcaggagaacactaaggctgagttctgccct 310
Query: 181 gcagtatataaagtggaatccactaccatggatgcattccactggctctggaagagcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcagtatataaagtggaatccactaccatggatgcattccactggctctggaagagcagc 250
Query: 241 ctttgtgtcaagggctctaggatacaatgtcttcctctgcccacactgc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctttgtgtcaagggctctaggatacaatgtcttcctctgcccacactgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
